Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A06
         (882 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    45   0.003
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    36   1.8  

>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 44.8 bits (101), Expect = 0.003
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = +1

Query: 604 SALMXXPPPGERRFAYWALFRFLXH 678
           +ALM  P  GERRFAYWALFRFL H
Sbjct: 25  AALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 35.5 bits (78), Expect = 1.8
 Identities = 15/30 (50%), Positives = 18/30 (60%)
 Frame = +3

Query: 630 RGKAVCXLGPLPXPXXLTPCARSFGXGDRY 719
           R   +C  G +P P  LT  ARSFG G+RY
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERY 55


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,213,229
Number of Sequences: 1657284
Number of extensions: 5125975
Number of successful extensions: 4686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4683
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79112361923
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)