Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A05
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     33   0.30 
04_04_1465 + 33794225-33794389,33794471-33794597,33794669-337947...    31   0.91 
07_01_0370 + 2749353-2749786,2749949-2750346,2750435-2750519,275...    30   2.8  
08_02_1438 + 27108359-27108889                                         29   3.7  
02_02_0272 - 8452994-8453187,8453850-8454975                           29   3.7  
10_01_0271 - 2881059-2881409                                           29   6.4  
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769...    28   8.5  
10_07_0134 + 13289641-13290216,13290435-13290914                       28   8.5  
07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166           28   8.5  

>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -1

Query: 382 GMRVPVRLSPXPFTLSRASPAEAALSLWRSLKSADPMAL 266
           G   P R+SP    L+   PAEAALS  RSL S  P ++
Sbjct: 138 GEEPPRRVSPAAVVLAVLLPAEAALSFIRSLSSLAPFSI 176


>04_04_1465 +
           33794225-33794389,33794471-33794597,33794669-33794799,
           33795153-33795254,33795337-33795420,33795504-33795731,
           33795934-33796038,33796376-33796731,33797146-33797303,
           33797399-33797505,33797852-33798061
          Length = 590

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -3

Query: 302 VAVVEVGGP--DGAEHVLVVAGERDLQGGPGGSVRV 201
           VA V  GGP  DGA+ V+ V     L G P GS RV
Sbjct: 91  VAYVTTGGPIPDGADAVVQVEDTEQLAGAPDGSKRV 126


>07_01_0370 +
           2749353-2749786,2749949-2750346,2750435-2750519,
           2751200-2751314,2751538-2751591
          Length = 361

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 314 SAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSP-RTCRH 159
           +A L + V + G   A  V++ AG R   GG GG V VH  AA  SP  T RH
Sbjct: 3   AARLASTV-LAGRRRAASVVIAAGPR--YGGGGGGVHVHPWAAFPSPTATTRH 52


>08_02_1438 + 27108359-27108889
          Length = 176

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -3

Query: 320 GGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRV 201
           GG  E V  VE    DGA  +L V  E+++    GG VRV
Sbjct: 79  GGVREAVRCVEYVDDDGAVLLLTVTTEKEVAVVDGGEVRV 118


>02_02_0272 - 8452994-8453187,8453850-8454975
          Length = 439

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/44 (40%), Positives = 24/44 (54%)
 Frame = -1

Query: 367 VRLSPXPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRG 236
           +RL P P +L RA+   A  + WR L +ADP  L  F +   RG
Sbjct: 20  LRLPPRPSSLPRAA---AVCARWRRLVTADPAFLRRFRAHHRRG 60


>10_01_0271 - 2881059-2881409
          Length = 116

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 21/60 (35%), Positives = 26/60 (43%)
 Frame = -3

Query: 350 PVYVVQSEPCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGGSVRVHCEAAGLSPR 171
           P  + Q   C        V+E G PD A  VL  A    + GG GGS R    +A  +PR
Sbjct: 34  PQELHQHHACASWTTKTTVIETGPPDLAVAVLGTARCLAISGG-GGSPRRWLPSATTAPR 92


>12_01_0831 -
           7688342-7688772,7690678-7692610,7693142-7693915,
           7694019-7694142,7696084-7696189,7696346-7696532
          Length = 1184

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -1

Query: 370 PVRLSPXPFTLSRASPAEAA 311
           P+RLSP P ++SR  P+ AA
Sbjct: 153 PIRLSPSPRSMSRTRPSSAA 172


>10_07_0134 + 13289641-13290216,13290435-13290914
          Length = 351

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 535 STPPPQRXEVGRVGNGAG 482
           +TPPP + E+G  GNG G
Sbjct: 298 TTPPPPKMELGITGNGGG 315


>07_01_0819 + 6606438-6607373,6608282-6608359,6608543-6609166
          Length = 545

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 212 SVRVHCEAAGLSPRTCRHVXT 150
           S+R+HC A  L+PR CR   T
Sbjct: 401 SLRLHCPAPLLAPRKCRETCT 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,474,674
Number of Sequences: 37544
Number of extensions: 302752
Number of successful extensions: 1024
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)