Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP04_F_A05
         (874 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    29   3.8  
SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)                 29   5.0  
SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  

>SB_17317| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -3

Query: 284 GGPDGAEHVLVVAGERDLQGGPG 216
           GGP+GA     VAGER L GG G
Sbjct: 93  GGPNGASGPAGVAGERGLPGGLG 115


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +3

Query: 156 HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 305
           HVP +     G +  NS     T G+ + +PL  ++K V+  +G    ND HK
Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577


>SB_44668| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-05)
          Length = 1604

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 19/72 (26%), Positives = 27/72 (37%)
 Frame = -1

Query: 355 PXPFTLSRASPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPSEFTVKLPACL 176
           P P  L R  PA   L     L+   P   S    LP+         +P+   ++ P   
Sbjct: 619 PTPLPLERPVPAVTRLPTHLPLEQPVPAVTSLPTHLPLERPLPDVTRLPTHLPLERPVPA 678

Query: 175 RARVGTXLPLAK 140
             R+ T LPL +
Sbjct: 679 VTRLPTDLPLER 690


>SB_54935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 326 PCGGSAELVAVVEVGGPDGAEHVLVVAGERDLQGGPGG 213
           PC G ++  A +E    D A+H + +    DL+GGP G
Sbjct: 112 PCFGPSQKAAQIEAS-KDFAKHFIKLIDTVDLEGGPVG 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,651
Number of Sequences: 59808
Number of extensions: 288769
Number of successful extensions: 598
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2503194881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)