Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P24
         (896 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   2.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.0  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   6.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
 Frame = +2

Query: 521 PXPXXXPPP-XPPPXPPXXXPXPXXXPP 601
           P P   PPP  PP  PP   P      P
Sbjct: 40  PNPSQGPPPGGPPGAPPSQNPSQMMISP 67


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = -3

Query: 633 GXPXXRXXGGPGGXXXGXGXXXGGXGGGXGGGXXXGXG 520
           G P     GG      G     G   GG GGG     G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLGIASG 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 539 PPPXPPPXPP 568
           P P PPP PP
Sbjct: 339 PKPAPPPPPP 348


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 867 PLLXPPXPPP 896
           P+L PP PPP
Sbjct: 48  PVLFPPGPPP 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,940
Number of Sequences: 438
Number of extensions: 12954
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)