Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P23
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585     31   0.94 
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    29   5.0  
04_04_1179 - 31512592-31515126                                         28   8.8  
03_06_0114 + 31751471-31751785,31751919-31752056,31752183-317522...    28   8.8  
02_01_0148 - 1051121-1051192,1051378-1051512,1052343-1052396,105...    28   8.8  

>04_03_0804 - 19844059-19844777,19844914-19844995,19846580-19846585
          Length = 268

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = -1

Query: 321 CXGHH*RSLCVTGLPKSPSSFWPSVPKTFPPPTCLSQVTSRGC 193
           C G H    C  G+   P   WP  P   PPP C ++  +  C
Sbjct: 225 CSGGH--GNCGCGIRPWPPQVWPPPPVCPPPPWCYTEDNANAC 265


>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +3

Query: 228 GEGRSSARWAKMMMGFLVSRLHREIFNDDRXKLTGAGLXHQGP 356
           G+  ++A +A+  +G +++ +H E+  +D+ ++ G      GP
Sbjct: 546 GDSSAAATYAQNQLGNILAEVHAELLPEDKVRIVGELKEKDGP 588


>04_04_1179 - 31512592-31515126
          Length = 844

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 178 TANWISFFVLPINFCVDTH 122
           TA+W +F VLP N+C+  H
Sbjct: 86  TASWYNFSVLPGNYCLRLH 104


>03_06_0114 +
           31751471-31751785,31751919-31752056,31752183-31752291,
           31756033-31756598
          Length = 375

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 597 PELVTPQNPLPXXP*XLTXXLLAXPKS 677
           PEL++P+NP    P  L   LLA P+S
Sbjct: 20  PELISPENPDHISPPPLLYQLLAGPES 46


>02_01_0148 -
           1051121-1051192,1051378-1051512,1052343-1052396,
           1052501-1052581,1052667-1052826,1053346-1053453,
           1053543-1053718,1053952-1054002,1054154-1054264,
           1054493-1054547,1055667-1055789,1055922-1056007,
           1056235-1056349,1056429-1056667
          Length = 521

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 175 ANWISFFVLPINFCVDTHQDRGEEI 101
           A W  F  LP  + +D H DR E++
Sbjct: 69  ALWAHFHRLPARYALDVHADRAEDV 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,447,065
Number of Sequences: 37544
Number of extensions: 445174
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)