Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P23
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   8.8  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -3

Query: 313 SSLKISLCNRLTKKPIIILAQRAEDLPSPHLFVP--GDVTRVSL*KLTAN-WISFFVLPI 143
           S  K+SLC+ +     +     AE +P   L +P  G     ++  +T + WI+  VL +
Sbjct: 277 SGEKVSLCSSILLSLTVFFLLLAEIIPPTSLAIPLLGKYLLFTMILVTLSIWITVCVLNV 336

Query: 142 NF 137
           +F
Sbjct: 337 HF 338


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = -3

Query: 328 VNLXRSSLKISLCNRLTKKPIIILAQRAEDLPSPHLFVPGD 206
           VNL R  +  ++   + +   ++L + AED P P  ++ G+
Sbjct: 641 VNLTRVDMYANMIETM-ELTSLLLTKVAEDRPLPEFYIGGN 680


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = -1

Query: 297 LCVTGLPKSPSSFWPSVP 244
           L V GLP   S FW   P
Sbjct: 89  LLVLGLPNELSLFWQQYP 106


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,595
Number of Sequences: 438
Number of extensions: 4982
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)