Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P23
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid t...    33   0.20 
At5g01790.1 68418.m00098 expressed protein                             29   5.6  
At1g53060.1 68414.m06008 legume lectin family protein                  28   7.3  
At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1...    28   9.7  

>At1g18280.1 68414.m02282 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to lipid
           transfer protein GI:2627141 from (Picea abies); contains
           Pfam profile PF00234 Protease inhibitor/seed storage/LTP
           family
          Length = 180

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 24/66 (36%), Positives = 32/66 (48%)
 Frame = -1

Query: 345 AVGLPRSICXGHH*RSLCVTGLPKSPSSFWPSVPKTFPPPTCLSQVTSRGCRFEN*PLTG 166
           A+ LP++ C      SLC T    + SS  P+ PKT PP +  S  T  G      P T 
Sbjct: 97  ALDLPKA-CGAKADVSLCKTSAGTNSSSTPPATPKT-PPASSTSTGTGSGSTGNAAPSTA 154

Query: 165 YPSSSS 148
            P+SS+
Sbjct: 155 KPTSSA 160


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -1

Query: 285 GLPKSPSSFWPSVPKTFPPPTCLS 214
           G PK PSS  P++P   PPP+  S
Sbjct: 64  GTPKHPSSELPTLPPLTPPPSHFS 87


>At1g53060.1 68414.m06008 legume lectin family protein
          Length = 242

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -1

Query: 369 PXGSQDPGAVGLPRSICXGHH*RSLCVTGLPKSPSSFWPSV 247
           P G    GA+GL R      H R++ +  +P  PSS   SV
Sbjct: 13  PDGMSKSGAIGLSRDNVPFSHGRAIFINPVPFKPSSTSSSV 53


>At2g20570.1 68415.m02402 golden2-like transcription factor (GLK1)
           identical to golden2-like transcription factor
           GI:13311003 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00249 Myb-like DNA-binding domain
          Length = 420

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -1

Query: 312 HH*RSLCVTGLPKSPSSFWPSV-PKTFPPPT 223
           HH R L V G P    S  P V PK  PPP+
Sbjct: 269 HHFRPLHVWGHPTVDQSIMPHVWPKHLPPPS 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,828,963
Number of Sequences: 28952
Number of extensions: 333611
Number of successful extensions: 647
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)