Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P20
         (940 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    25   0.85 
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      25   1.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      25   1.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 25.0 bits (52), Expect = 0.85
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -3

Query: 755 GGGXGGXXXGXGGGGGG 705
           GGG GG   G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108



 Score = 22.2 bits (45), Expect = 6.0
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 750 GGGXXXGXXGXGGGGGG 700
           GGG   G  G  G GGG
Sbjct: 92  GGGRGGGRDGDRGDGGG 108


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 712 PPPPXPXXXPPXPPPXXXP 768
           PPPP P   PP  P    P
Sbjct: 736 PPPPHPHHQPPRNPVGTNP 754


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 712 PPPPXPXXXPPXPPPXXXP 768
           PPPP P   PP  P    P
Sbjct: 628 PPPPHPHHQPPRNPVGTNP 646


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 588 PPPPPPP 608
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +1

Query: 520 PXXXXXGXXXPPPPXXFFXXPXXPPXPPPPXPP 618
           P     G   PP        P  P  PP P PP
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP 187


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 909 PPXPSPPP 932
           PP PSPPP
Sbjct: 98  PPTPSPPP 105



 Score = 21.8 bits (44), Expect = 7.9
 Identities = 10/28 (35%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
 Frame = +2

Query: 860 PPPPPXXPXXSPXXXXXP--PPXPAPPP 937
           P P    P  +      P  PP P+PPP
Sbjct: 78  PSPKRSSPILAEKVSVSPTTPPTPSPPP 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,283
Number of Sequences: 336
Number of extensions: 3744
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 26375415
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)