Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P19
         (1350 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   1.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   6.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   6.9  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.6 bits (51), Expect = 1.7
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +1

Query: 622 PPXPXPPPXP-PPIXHPXXXXP 684
           PP P  PP P PPI  P    P
Sbjct: 175 PPLPQVPPLPLPPIFPPTMINP 196


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 623 PPHPXXPPXPP 655
           PPHP   P PP
Sbjct: 231 PPHPGLSPHPP 241


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 623 PPHPXXPPXPP 655
           PPHP   P PP
Sbjct: 123 PPHPGLSPHPP 133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,375
Number of Sequences: 336
Number of extensions: 3047
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 59
effective length of database: 102,761
effective search space used: 40076790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)