Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_P18
(911 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.015
SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 2.3
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 30 3.0
SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4) 28 9.1
SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4) 28 9.1
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 37.5 bits (83), Expect = 0.015
Identities = 24/85 (28%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Frame = +2
Query: 659 PPPXXXPXLLXPPX-PXGKVVXPVXFPGXXXNXPAPPPGAHRRLLXXXXPFPXXXXXXXX 835
PPP P + PP P G P +PG + PP G + R L P+
Sbjct: 329 PPPIRAPVDVYPPRAPQGASQTP-PYPGSHYSRVPPPDGPYTRALPPGEPYARMPPPGAT 387
Query: 836 XXXXXXXXXXPXRXXPPXPPXPRXP 910
R PP P PR P
Sbjct: 388 HPRVPSPGASHPRVPPPGAPHPRVP 412
Score = 34.7 bits (76), Expect = 0.10
Identities = 27/88 (30%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Frame = +2
Query: 650 PR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPPGA-HRRLLXXXXPFPXXXXX 826
PR PPP + PP + V P PG + PPPGA H R P P
Sbjct: 399 PRVPPPGAPHPRVPPPGASHQRVRP---PG-APHPRVPPPGAPHPRFPPPGAPHPRVPPP 454
Query: 827 XXXXXXXXXXXXXPXRXXPPXPPXPRXP 910
R PP P PR P
Sbjct: 455 GAPHPRVPPPGAPHPRVPPPGAPHPRVP 482
Score = 34.3 bits (75), Expect = 0.14
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Frame = +2
Query: 650 PR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXP------APPPGA-HRRLLXXXXPF 808
PR PPP + PP V P P P PPPGA H+R+ P
Sbjct: 449 PRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPHQRVPPPGAPH 508
Query: 809 PXXXXXXXXXXXXXXXXXXPXRXXPPXPPXPRXP 910
P R PP P PR P
Sbjct: 509 PRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVP 542
Score = 33.9 bits (74), Expect = 0.18
Identities = 27/94 (28%), Positives = 30/94 (31%), Gaps = 7/94 (7%)
Frame = +2
Query: 650 PR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXP------APPPGA-HRRLLXXXXPF 808
PR PPP + PP + V P P P PPPGA H R+ P
Sbjct: 479 PRVPPPGAPHPRVPPPGAPHQRVPPPGAPHPRVPPPGAPHPRVPPPGAPHPRVPPPGAPH 538
Query: 809 PXXXXXXXXXXXXXXXXXXPXRXXPPXPPXPRXP 910
P R PP P PR P
Sbjct: 539 PRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVP 572
Score = 31.5 bits (68), Expect = 0.98
Identities = 26/94 (27%), Positives = 28/94 (29%), Gaps = 7/94 (7%)
Frame = +2
Query: 650 PR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXP------APPPGA-HRRLLXXXXPF 808
PR PPP + PP V P P P PPPG H R+ P
Sbjct: 539 PRVPPPGAPHPRVPPPGASHPRVPPPGAPHPRVPPPGAPHPRVPPPGTPHPRVPPPGAPH 598
Query: 809 PXXXXXXXXXXXXXXXXXXPXRXXPPXPPXPRXP 910
P R PP PP R P
Sbjct: 599 PKVPPPGAPYQRLPYSGAYHPRLPPPGPPYQRVP 632
>SB_40518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1000
Score = 32.3 bits (70), Expect = 0.56
Identities = 16/41 (39%), Positives = 16/41 (39%)
Frame = +2
Query: 650 PR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPPG 772
P PPP L PP P G PG P PPPG
Sbjct: 920 PPPPPPPGGNAPLPPPPPGGSAPSQPPPPGGNAPPPPPPPG 960
Score = 30.7 bits (66), Expect = 1.7
Identities = 23/84 (27%), Positives = 24/84 (28%)
Frame = +2
Query: 659 PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPPGAHRRLLXXXXPFPXXXXXXXXX 838
PP P PP P G P PG PPPG + P P
Sbjct: 914 PPGGSVPP--PPPPPGGNAPLPPPPPGGSAPSQPPPPGGN----APPPPPPPGGSAPPPG 967
Query: 839 XXXXXXXXXPXRXXPPXPPXPRXP 910
P PP PP P P
Sbjct: 968 GGAPPLPPPPGGSAPPPPPPPPPP 991
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 30.3 bits (65), Expect = 2.3
Identities = 18/56 (32%), Positives = 18/56 (32%)
Frame = +2
Query: 614 PPXXTXXXXXXKPR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPPGAHR 781
PP P PPP P PP P P P P PPP A R
Sbjct: 380 PPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPALR 435
Score = 29.1 bits (62), Expect = 5.2
Identities = 17/54 (31%), Positives = 17/54 (31%)
Frame = +2
Query: 614 PPXXTXXXXXXKPR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPPGA 775
PP P PPP P PP P P P P PPP A
Sbjct: 366 PPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPA 419
Score = 28.3 bits (60), Expect = 9.1
Identities = 16/52 (30%), Positives = 16/52 (30%)
Frame = +2
Query: 614 PPXXTXXXXXXKPR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPP 769
PP P PPP P PP P P P P PPP
Sbjct: 375 PPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPP 426
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 29.9 bits (64), Expect = 3.0
Identities = 28/120 (23%), Positives = 29/120 (24%)
Frame = +2
Query: 551 PXPPXQCPKXMXXLXNXXXXGPPXXTXXXXXXKPR*PPPXXXPXLLXPPXPXGKVVXPVX 730
P PP P N PP P PPP P PP P P
Sbjct: 98 PYPPYPPPPPYPPPPNPPYPPPPNAPYPPPPNPPY-PPPPNAP---YPPSPNAPYPPPPN 153
Query: 731 FPGXXXNXPAPPPGAHRRLLXXXXPFPXXXXXXXXXXXXXXXXXXPXRXXPPXPPXPRXP 910
P P PP P+P P PP P P P
Sbjct: 154 PPYPPPLYPPPPNPPPPNAPYPPPPYPPPPNPPYPPPPNPPYPPPPNAPNPPPPNPPYPP 213
Score = 28.7 bits (61), Expect = 6.9
Identities = 24/90 (26%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Frame = +2
Query: 650 PR*PPPXXXPXLLXPPX---PXGKVVXPVXFPGXXXNXPAPPPGAHRRLLXXXXPFPXXX 820
P P P P L PP P P +P N P PPP P+P
Sbjct: 149 PPPPNPPYPPPLYPPPPNPPPPNAPYPPPPYP-PPPNPPYPPP--------PNPPYPPPP 199
Query: 821 XXXXXXXXXXXXXXXPXRXXPPXPPXPRXP 910
P PP PP P P
Sbjct: 200 NAPNPPPPNPPYPPPPNAPNPPYPPPPNAP 229
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 29.9 bits (64), Expect = 3.0
Identities = 14/37 (37%), Positives = 15/37 (40%)
Frame = +2
Query: 659 PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPP 769
PPP L PP P G + P PG P PP
Sbjct: 179 PPPAPPGVLAPPPAPPGVLPPPPAPPGALIPPPPAPP 215
>SB_41910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1486
Score = 29.5 bits (63), Expect = 3.9
Identities = 29/99 (29%), Positives = 31/99 (31%)
Frame = +2
Query: 614 PPXXTXXXXXXKPR*PPPXXXPXLLXPPXPXGKVVXPVXFPGXXXNXPAPPPGAHRRLLX 793
PP T PR PPP + PP P P P P PPPG R +
Sbjct: 1210 PPPMTNTMTHSAPR-PPPMGHHMMNMPPPPP---AMPPDGPPKFMGLPPPPPG--MRPMP 1263
Query: 794 XXXPFPXXXXXXXXXXXXXXXXXXPXRXXPPXPPXPRXP 910
PF P R PP PP P P
Sbjct: 1264 PQPPF----------------MPPPPRMQPPGPPGPPGP 1286
>SB_39860| Best HMM Match : DBR1 (HMM E-Value=8.4)
Length = 355
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 154 KRDAPKEDNSLNTLAESAKKTIEELREKVESALGPGD 264
K+D + N LN E + ++ELR +V+S + GD
Sbjct: 257 KKDTDDKLNKLNKAQEETGQKLDELRHEVDSKVCMGD 293
>SB_36932| Best HMM Match : HTH_8 (HMM E-Value=1.4)
Length = 721
Score = 28.3 bits (60), Expect = 9.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 154 KRDAPKEDNSLNTLAESAKKTIEELREKVE 243
KR APK+ N+ + L +K EELR++ +
Sbjct: 62 KRQAPKDRNTASVLRAKIRKQEEELRKETQ 91
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.3 bits (60), Expect = 9.1
Identities = 22/78 (28%), Positives = 26/78 (33%)
Frame = +2
Query: 536 PR*VCPXPPXQCPKXMXXLXNXXXXGPPXXTXXXXXXKPR*PPPXXXPXLLXPPXPXGKV 715
P + P PP P + P T +P PPP L PP P +V
Sbjct: 911 PLPLAPEPPPPLPPPPPPIQTTRPTVPTTPTTQASTTRPTPPPP---TSALPPPIPATQV 967
Query: 716 VXPVXFPGXXXNXPAPPP 769
P P P PPP
Sbjct: 968 PPPPLPP-----LPPPPP 980
>SB_31804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 28.3 bits (60), Expect = 9.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 154 KRDAPKEDNSLNTLAESAKKTIEELREKVESALGPGD 264
K+D + N LN E + ++ELR +V+S + GD
Sbjct: 291 KKDTDDKLNKLNKAQEETGQKLDELRHEVDSKVCMGD 327
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,894,195
Number of Sequences: 59808
Number of extensions: 281589
Number of successful extensions: 790
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -