Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P17
         (933 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical...    32   0.67 
Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    29   3.6  
Z69884-5|CAA93747.1|  423|Caenorhabditis elegans Hypothetical pr...    28   8.3  
U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (gr...    28   8.3  

>AC084154-11|AAK29874.1|  350|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.1 protein.
          Length = 350

 Score = 31.9 bits (69), Expect = 0.67
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = -1

Query: 375 PNPESCPKLPNPESRPKSPNPESRPK 298
           P PE  PK P PE +PK P PE +PK
Sbjct: 199 PKPEPKPK-PKPEPKPK-PKPEPKPK 222



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -1

Query: 375 PNPESCPKLPNPESRPK-SPNPESRPK 298
           P PE  PK P PE +PK  P+P+ +PK
Sbjct: 163 PKPEPKPK-PKPEPKPKPKPDPKPKPK 188



 Score = 30.7 bits (66), Expect = 1.6
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 375 PNPESCPKLPNPESRPK-SPNPESRPKLXNP 286
           P PE  PK P PE +PK  P P+ +PK  NP
Sbjct: 207 PKPEPKPK-PKPEPKPKPKPKPKPKPK-PNP 235



 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 375 PNPESCPKLPNPESRPK-SPNPESRPK 298
           P P+  PK PNP+  PK  P PE +PK
Sbjct: 189 PKPKPKPK-PNPKPEPKPKPKPEPKPK 214



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -1

Query: 375 PNPESCPK-LPNPESRPK-SPNPESRPK 298
           P PE  PK  P P+ +PK +PNP+  PK
Sbjct: 215 PKPEPKPKPKPKPKPKPKPNPNPKPEPK 242



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 375 PNPESCPKLPNPESRPK-SPNPESRPKLXNP 286
           P PE  PK P P+ +PK  P P+ +PK  NP
Sbjct: 171 PKPEPKPK-PKPDPKPKPKPKPKPKPK-PNP 199



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 375 PNPESCPKLPNPESRPK-SPNPESRPK 298
           P+P+  PK P P+ +PK +P PE +PK
Sbjct: 181 PDPKPKPK-PKPKPKPKPNPKPEPKPK 206



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 375 PNPESCPKLPNPESRPKSPNPESRPK 298
           PNP   P+ P P+ +PK P PE +PK
Sbjct: 233 PNPNPKPE-PKPKPKPK-PKPEPKPK 256



 Score = 28.3 bits (60), Expect = 8.3
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 375 PNPESCPKLPN-PESRPKSPNPESRPK 298
           P PE  PK  + P SRPK PNP  +PK
Sbjct: 283 PMPELKPKPKHKPNSRPK-PNPRPKPK 308


>Z66565-6|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
           protein T04F8.8 protein.
          Length = 165

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 390 PESWCPNPESCPKLPNPESRPK-SPNPESRPK 298
           P+ + P P   P  P PE  P+  P PE +P+
Sbjct: 92  PQGYVPPPPPPPTQPEPEPEPRPEPQPEPQPE 123


>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -1

Query: 390 PESWCPNPESCPKLPNPESRPKSPNP 313
           P  +CP P  CP  P P   P  P P
Sbjct: 52  PPQFCPPPPMCPPPPPPPPPPMCPPP 77


>Z69884-5|CAA93747.1|  423|Caenorhabditis elegans Hypothetical
           protein F31F6.7 protein.
          Length = 423

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = +2

Query: 116 FPHGSSDVDGSGEVEAVAGTLKK-GFGFG 199
           F HG SD+ G G+++A++ T KK G+G G
Sbjct: 68  FVHGVSDIAG-GKMQALSATYKKHGYGSG 95


>U39852-7|AAK39260.1|  240|Caenorhabditis elegans Ground-like (grd
           related) protein 6 protein.
          Length = 240

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/31 (41%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = -1

Query: 390 PESWCPNPESCPKLPNPESR-PKSPNPESRP 301
           P  +CP P  CP  P P    P  P P  RP
Sbjct: 61  PAQFCPPPPICPPPPPPPMPCPPPPPPMPRP 91


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,449,412
Number of Sequences: 27780
Number of extensions: 183908
Number of successful extensions: 740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2402214122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)