Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P17
         (933 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49750.1 68414.m05579 leucine-rich repeat family protein cont...    31   1.4  
At1g79480.1 68414.m09263 hypothetical protein low similarity to ...    29   3.3  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    29   5.8  
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ...    29   5.8  
At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family...    29   5.8  
At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family...    28   7.7  

>At1g49750.1 68414.m05579 leucine-rich repeat family protein
           contains leucine-rich repeats, Pfam:PF00560
          Length = 494

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/30 (46%), Positives = 14/30 (46%)
 Frame = -1

Query: 390 PESWCPNPESCPKLPNPESRPKSPNPESRP 301
           P   CP P S P  P P S P SP P   P
Sbjct: 66  PPPPCPPPPSPPPCPPPPSPPPSPPPPQLP 95



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 378 CPNPESCPKLPNPESRPKSPNPESRPKLXNP 286
           CP P   P  P P S P  P P S P    P
Sbjct: 61  CPPPPPPPPCPPPPSPPPCPPPPSPPPSPPP 91


>At1g79480.1 68414.m09263 hypothetical protein low similarity to
           beta-1,3-glucanase-like protein GI:9758115 from
           [Arabidopsis thaliana]
          Length = 356

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 399 LXNPESWCPNPESCPKLPNPESRPKSPNPESRPKLXNP 286
           L NP     NP S P  P   S P  P+  S P   NP
Sbjct: 86  LPNPPDSSSNPNSNPNPPESSSNPNPPDSSSNPN-SNP 122


>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 390 PESWCPNPESCPKLPNPESRPKSPNPE 310
           P S+CP P + P +P P+  P  P P+
Sbjct: 144 PSSFCPKPPTAPVMPPPQV-PVMPPPQ 169


>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
           contains multiple zinc finger domains: PF00096: Zinc
           finger, C2H2 type
          Length = 412

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -2

Query: 365 NRARSFRIRSHVQSHRTQSHDRNYXIQGCDFQSRQIRNHD-QNCRSRY 225
           +R++++ I  H+QSH     +     + C+       NH  Q C + +
Sbjct: 28  SRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEF 75


>At1g56530.1 68414.m06501 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965;
          Length = 185

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/30 (56%), Positives = 19/30 (63%)
 Frame = -1

Query: 390 PESWCPNPESCPKLPNPESRPKSPNPESRP 301
           PES  P PES P  P+PES P  P+PE  P
Sbjct: 149 PES--PPPESLPP-PSPES-PSPPSPEPPP 174


>At3g02120.1 68416.m00178 hydroxyproline-rich glycoprotein family
           protein
          Length = 126

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -1

Query: 372 NPESCPKLPNPESRPKSPNPESRPKLXNP 286
           NPES P  P PES  K  +P  R     P
Sbjct: 25  NPESSPPRPFPESSRKHDSPPPRASTNEP 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,340
Number of Sequences: 28952
Number of extensions: 190923
Number of successful extensions: 1385
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2227127592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)