Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P16
         (931 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   1.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   1.7  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   5.2  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -2

Query: 729 PNKGXWGSPNFPXIKAXXF 673
           PN   WG+PN P +++  F
Sbjct: 837 PNLTKWGNPNRPIVQSGIF 855


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 11/18 (61%), Positives = 12/18 (66%), Gaps = 1/18 (5%)
 Frame = +3

Query: 264 RQSGPGDRGPR-FS*SHR 314
           R  GPG +GPR F  SHR
Sbjct: 56  RNPGPGSKGPRDFPRSHR 73


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 5.2
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 214 STWAREQHWSCSKPAPERRRRIGSLRNSL 128
           S W    H +C+     +RR+ GS RN +
Sbjct: 71  SKWLSINHSACAIRCLAQRRKGGSCRNGV 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,635
Number of Sequences: 438
Number of extensions: 4099
Number of successful extensions: 37
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30355689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)