Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P15
         (896 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.17 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   3.6  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   4.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.3  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.3  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 277 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 170
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = -2

Query: 214 LKSFH-LGSGAALTAPRASTNAKTKLXIRTKFILPKFYSAGEFKIPIQYRSTRTLRMIKS 38
           L+S H L S  + T PR   N    +    K + P  ++   F+I + Y  TR L  I++
Sbjct: 291 LQSVHYLISTISATLPRTLYNIVLFMVAAAKTVAPSVFATFAFRISVMYAVTRILPAIQN 350


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/40 (30%), Positives = 13/40 (32%)
 Frame = +3

Query: 693 PPPXRXPXPFXGXVXXXPPTXXKTPXXXXXAPPPXPHXAP 812
           P P   P P    +   PP     P      PPP P   P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +1

Query: 772 AXXGPPPPXPXPPPXTXF 825
           A  G PPP P PPP   F
Sbjct: 301 ANGGLPPPPPPPPPSNDF 318


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +2

Query: 743 PPHPXKNPPXRXXGPPPXXPXRP 811
           PP P K PP     PPP  P  P
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAP 180


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/33 (33%), Positives = 11/33 (33%)
 Frame = +2

Query: 731  GXXXPPHPXKNPPXRXXGPPPXXPXRPXQPXXP 829
            G   P HP   PP R     P     P  P  P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPP 1711


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -3

Query: 819 GXWGRXGXWGGGPXXRXGGF--FXGWGG 742
           G +G  G   GGP    GGF  F G+GG
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGG 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,164
Number of Sequences: 5004
Number of extensions: 42572
Number of successful extensions: 163
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)