Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P14
         (843 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06)                31   0.89 
SB_39738| Best HMM Match : PAN (HMM E-Value=0.0093)                    29   6.2  
SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.2  
SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  
SB_4922| Best HMM Match : CXC (HMM E-Value=0.013)                      28   8.2  
SB_25357| Best HMM Match : Homeobox (HMM E-Value=8.3e-28)              28   8.2  

>SB_55053| Best HMM Match : MORN_2 (HMM E-Value=2.6e-06)
          Length = 417

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
 Frame = +1

Query: 268 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCXAQTVQNY--- 423
           C G+T  L+  TW  + + G   + NG    L   A   Y    VD  C  QT+  Y   
Sbjct: 227 CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGQTISLYGTA 286

Query: 424 ---MRRFGQD--CNGDGVVXCYDYMAIHKKGG 504
               +  G D  CNG  +        ++++GG
Sbjct: 287 WTVYQEGGVDKVCNGQTISLYGTAWTVYQEGG 318



 Score = 29.5 bits (63), Expect = 3.6
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
 Frame = +1

Query: 268 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCXAQTVQNY--- 423
           C G+T  L+  TW  + + G   + NG    L   A   Y    VD  C   T+  Y   
Sbjct: 11  CNGQTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQEGGVDKVCNGWTISLYGTA 70

Query: 424 ---MRRFGQD--CNGDGVVXCYDYMAIHKKGG 504
               +  G D  CNG  +       +++++GG
Sbjct: 71  WTVFQEGGVDKVCNGQTISLYGTAWSVYQEGG 102



 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
 Frame = +1

Query: 268 CEGETCGLFRITWGYWADAGKPTI-NG----LSPDAPDAYSSCTVDPYCXAQTVQNY 423
           C G T  L+  TW  + + G   + NG    L   A   Y    VD  C  QT+  Y
Sbjct: 347 CNGWTISLYGTTWSVYQEGGVDKVCNGQTISLYGTAWSVYQDGGVDKVCNGQTISLY 403


>SB_39738| Best HMM Match : PAN (HMM E-Value=0.0093)
          Length = 70

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 148 TKPDHSRSHCVENTQQKNYNIKK*CACARTN 56
           T P    + C+ENTQ  +YN+K    C   N
Sbjct: 15  TSPVWCGAQCLENTQCASYNVKNGVTCELNN 45


>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 148 TKPDHSRSHCVENTQQKNYNIKK*CACARTN 56
           T P    + C+ENTQ  +YN+K    C   N
Sbjct: 338 TSPVWCGAQCLENTQCASYNVKNGVTCELNN 368


>SB_50089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +1

Query: 301 TWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCXAQTVQNYMRRFGQ 441
           TW +W+  G P ++  S  A  + S  T  P+   +  QN +   G+
Sbjct: 38  TWFFWSSRGYPVVSLASQPASQSVSRATPRPHTAPKWRQNTITAQGK 84


>SB_4922| Best HMM Match : CXC (HMM E-Value=0.013)
          Length = 600

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 214 CVSGCICQAISGCKQGLQCEGETCGLFRITWGYWADAG 327
           C +GC+ +  +  K GL+C G  C          ADAG
Sbjct: 494 CAAGCLTKRCTCIKNGLKCYGCKCTRCENPLNILADAG 531


>SB_25357| Best HMM Match : Homeobox (HMM E-Value=8.3e-28)
          Length = 317

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 238 PGKCSPRHTSVXRGEFRDIGETDSGNQQQRTKPDHSRSHCVENTQQ 101
           P +C  +     R E R+   T   NQQQ++KP   RS    + QQ
Sbjct: 99  PDECDAKEQ--IRSE-REASNTSPSNQQQKSKPRRKRSRAAFSHQQ 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,559,804
Number of Sequences: 59808
Number of extensions: 457698
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2383424791
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)