Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P14
         (843 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical pr...    60   3e-09
AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical ...    55   6e-08
AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical ...    53   3e-07
AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical ...    37   0.016
U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical pr...    29   5.5  
X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.      28   7.2  

>U41547-6|AAA83197.1|  139|Caenorhabditis elegans Hypothetical
           protein F22A3.6a protein.
          Length = 139

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 5/101 (4%)
 Frame = +1

Query: 226 CICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKPTIN-GLSPDAPDAYSSCTVD 390
           CIC   SGCK  + C  +    +CG ++I  GY+ D G+PT   G + +A  A+  C  D
Sbjct: 23  CICMRESGCKP-IGCHMDVGSLSCGYYQIKIGYYEDCGQPTKKAGETTEA--AWKRCADD 79

Query: 391 PYCXAQTVQNYMRRFGQDCNGDGVVXCYDYMAIHKKGGYXC 513
             C    V+NY  R+   CNG G+  C      H  G   C
Sbjct: 80  LNCATTCVENYYNRYKSQCNGLGMGACQIMSRNHNGGPRGC 120


>AF067611-3|AAC19179.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.3 protein.
          Length = 139

 Score = 55.2 bits (127), Expect = 6e-08
 Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
 Frame = +1

Query: 226 CICQAISGCKQ---GLQCEGETCGLFRITWGYWADAGKPTI-NGLSPDAPDAYSSCTVDP 393
           CIC   SGCK     +     +CG ++I   Y+ D G+PT  +G + +A  A+  C  D 
Sbjct: 23  CICMRESGCKPIGCNMDVGSLSCGYYQIKLPYYEDCGQPTKKSGETTEA--AWKRCANDL 80

Query: 394 YCXAQTVQNYMRRFGQDCNGDGVVXCYDYMAIHKKGG 504
            C    V+NY  R+   C G G   C + MA +  GG
Sbjct: 81  SCATTCVENYYNRYKSQCAGTGQGAC-EVMARNHNGG 116


>AF067611-4|AAC19181.1|  139|Caenorhabditis elegans Hypothetical
           protein C45G7.2 protein.
          Length = 139

 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
 Frame = +1

Query: 226 CICQAISGCKQGLQCEGE----TCGLFRITWGYWADAGKP-TINGLSPDAPDAYSSCTVD 390
           CIC   SGCK  + C  +    +CG ++I   Y+ D G+P   +G S +   A+  C  D
Sbjct: 23  CICMRESGCKP-IGCHMDVGSLSCGYYQIKIPYYEDCGQPGKKHGESTEV--AWKRCADD 79

Query: 391 PYCXAQTVQNYMRRFGQDCNGDGVVXCYDYMAIHKKGG 504
             C    V+NY  R+  +C G G   C + MA +  GG
Sbjct: 80  LKCATNCVENYYNRYKHECAGTGQGAC-EVMARNHNGG 116


>AF067611-5|AAC19180.1|  145|Caenorhabditis elegans Hypothetical
           protein C45G7.1 protein.
          Length = 145

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +1

Query: 265 QCEGETC-GLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYCXAQTVQNYMRRFGQ 441
           QC    C G F I   Y+ D G+P           A+  C  D  C    + NY  R+  
Sbjct: 20  QCMHCMCLGNFVIKLPYYIDCGEPG-KQRGESTESAWKRCADDLDCAETCMMNYYHRYKS 78

Query: 442 DCNGDGVVXC 471
            CNG G+  C
Sbjct: 79  QCNGLGMSEC 88


>U58747-4|AAF99902.2|  159|Caenorhabditis elegans Hypothetical
           protein C55F2.2 protein.
          Length = 159

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
 Frame = +1

Query: 229 ICQAISGCKQGLQCEGET-----CGLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDP 393
           +C   SGC   L C  +      CG FR+    +    +P       +  +A+ +C  D 
Sbjct: 35  MCDQDSGCVP-LGCSVDQFDRIGCGYFRLNIYQFQQCYQPGKKDEDTEN-EAWMNCAQDY 92

Query: 394 YCXAQTVQNYMRRFGQDCNGDGVVXCYDYMAIHKKGGYXCTAXTSF*LCKRV 549
            C A  ++    +F   C G     C     IH  G   C    +    KRV
Sbjct: 93  QCSASCIRTLATKFRVKCYGKS--ECETIARIHDGGANGCRDRGTIGYWKRV 142


>X91045-1|CAA62505.1|  693|Caenorhabditis elegans let-653 protein.
          Length = 693

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 332 PLSMVSHLTLRMPTLAALWTRTAPXRPSKTT*EDLAR---TATATEWSTAMTTWRSTRRE 502
           PL+  + +   +PT     + T P  PSKTT         T T T  +++ TT  +T++ 
Sbjct: 365 PLTTTTEVISDVPTTTVQTSTTVPTTPSKTTATTTTTPKPTTTETATTSSSTTTVTTQKP 424

Query: 503 AT 508
            T
Sbjct: 425 TT 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,356,646
Number of Sequences: 27780
Number of extensions: 321270
Number of successful extensions: 642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)