Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P14
         (843 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pin...    30   2.2  
At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9) i...    29   5.1  
At1g31930.2 68414.m03924 extra-large guanine nucleotide binding ...    29   5.1  
At1g31930.1 68414.m03923 extra-large guanine nucleotide binding ...    29   5.1  
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ...    28   8.9  
At1g42470.1 68414.m04897 patched family protein similar to SP|O1...    28   8.9  

>At3g48700.1 68416.m05318 expressed protein similar to PrMC3 [Pinus
           radiata] GI:5487873
          Length = 329

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +1

Query: 247 GCKQGLQCEGETCGLFRITWGYWADAGKPTING 345
           GC + L    E   L R  WGYW   GK   NG
Sbjct: 257 GCGKVLVMVAEKDALVRQGWGYWEKLGKSRWNG 289


>At4g13460.1 68417.m02102 SET domain-containing protein (SUVH9)
           identical to SUVH9 [Arabidopsis thaliana] GI:13517759;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain; identical to
           cDNA SUVH9 (SUVH9) GI:13517758
          Length = 650

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/70 (28%), Positives = 29/70 (41%)
 Frame = +1

Query: 220 SGCICQAISGCKQGLQCEGETCGLFRITWGYWADAGKPTINGLSPDAPDAYSSCTVDPYC 399
           SGC C  ++GC  G  CE +  G   I + Y       T+    P   +  S+C   P C
Sbjct: 432 SGCDC--VNGCGSGCLCEAKNSG--EIAYDY-----NGTLIRQKPLIHECGSACQCPPSC 482

Query: 400 XAQTVQNYMR 429
             +  Q  +R
Sbjct: 483 RNRVTQKGLR 492


>At1g31930.2 68414.m03924 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 142 VLCVAVGCRSLFRRCLGTPPX*RRCVSGCICQAISGCKQ 258
           ++C    C +   R +G+ P  R+CVS CI QAI   K+
Sbjct: 191 IVCDEKYCGNCVLRAMGSMPEGRKCVS-CIGQAIDESKR 228


>At1g31930.1 68414.m03923 extra-large guanine nucleotide binding
           protein, putative / G-protein, putative similar to
           extra-large G-protein (XLG) [Arabidopsis thaliana]
           GI:3201680; contains Pfam profile PF00503: G-protein
           alpha subunit
          Length = 848

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 142 VLCVAVGCRSLFRRCLGTPPX*RRCVSGCICQAISGCKQ 258
           ++C    C +   R +G+ P  R+CVS CI QAI   K+
Sbjct: 191 IVCDEKYCGNCVLRAMGSMPEGRKCVS-CIGQAIDESKR 228


>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
           protein / G-protein (XLG) identical to extra-large
           G-protein (XLG) [Arabidopsis thaliana] GI:3201680
          Length = 888

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 142 VLCVAVGCRSLFRRCLGTPPX*RRCVSGCICQAISGCKQG 261
           ++C A  C S   R +G+ P  R+CV+ CI   I   K+G
Sbjct: 241 LVCDAKYCNSCVLRAMGSMPEGRKCVT-CIGFPIDESKRG 279


>At1g42470.1 68414.m04897 patched family protein similar to
           SP|O15118 Niemann-Pick C1 protein precursor from Homo
           sapiens (GB:AAB63982) (GI:2276463); contains Pfam
           profile PF02460 Patched family
          Length = 1272

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 181 GETDSGNQQQRTKPDHSRSHCVENTQQKNY 92
           GE +S NQQ   KPD  +S  ++NT Q+N+
Sbjct: 297 GERNSVNQQ---KPDTIQSQMLQNTPQRNW 323


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,508,214
Number of Sequences: 28952
Number of extensions: 297719
Number of successful extensions: 620
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1950880000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)