Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P13
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    28   2.0  
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa...    27   3.4  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    27   4.5  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    26   6.0  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 624 SNVRDVDVXLGDQPRT-PNEIPESXTXDHATXSTSETMRSP 743
           SN+RD++  + D+PR+ P+ IP S +  H+     E    P
Sbjct: 662 SNIRDMEHTISDKPRSEPDAIPSSKSM-HSNKPFEEKSEKP 701


>SPCC584.04 |sup35|erf3|translation release factor eRF3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 126 PRHSTTMARHIGRITITT-PSVLTFGKACWTHI 221
           P H+TT  R I +I I   PS+LT G +C  HI
Sbjct: 553 PVHATT--RFIAQIAILELPSILTTGYSCVMHI 583


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 200 ESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 379
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 380 VKAKN 394
            K  N
Sbjct: 163 SKKLN 167


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +2

Query: 164  YHHYDPFSPYVRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRV 319
            +  Y  F    +E   +T S + NL  E+++L NM+ EL  KFP +   GR+
Sbjct: 1484 FTQYRLFDVRGKERTSNTMSTY-NL-EEVEYLVNMVDELLNKFPDVNFTGRI 1533


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 564 QPTDTTSTNVSREEMEFXTQSNVRDVDVXLGDQPRTPNEIPE 689
           QP D+ +    R+  E  T S+  DVD+ LG       E P+
Sbjct: 203 QPVDSVANPQLRKASEITTISSRSDVDILLGKFKALIQESPD 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,207,269
Number of Sequences: 5004
Number of extensions: 61846
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)