Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P13
         (858 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   1.8  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   30   2.8  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  
SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.8  

>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2211

 Score = 26.2 bits (55), Expect(2) = 1.8
 Identities = 19/81 (23%), Positives = 31/81 (38%)
 Frame = +1

Query: 466  EFXRQLGLRERRVENHLPAEXKAAXG*QEASCPSPLTPPLXM*VVKRWSSPPRATCGTLT 645
            ++ R  G  ++R +     + K A      S PSP          +   + P + CG L+
Sbjct: 1769 KYQRDYGRYQQRRKKSSIGKRKVAREGPSQSKPSPTLTTRSNFTTRPDQNNPWSRCGLLS 1828

Query: 646  SXLETSPEHPMRSPKAVQXTT 708
                TSP    ++P   Q  T
Sbjct: 1829 CPTTTSPAKRRKTPALSQSAT 1849



 Score = 22.6 bits (46), Expect(2) = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 331  VSDIYSPAWLRTERHQRESEKWSAD 405
            +S+  SPA    ERH +  EK+  D
Sbjct: 1749 LSNDESPALAEKERHDKALEKYQRD 1773


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
 Frame = +1

Query: 562  PSPLTPPLXM*-VVKRWSSPPRATCGTLTSXLETSPEHPMRSPKAVQXTTLXXPHQRXCG 738
            P P  P L     V +W+SPP  T  ++T    TSP H +  P     + L        G
Sbjct: 1117 PIPHAPHLATGQAVPQWASPPIDTVSSIT----TSPIHHLAPPPGAIQSALQAHLTGGAG 1172

Query: 739  VLARFHIKFDP 771
            VL RF     P
Sbjct: 1173 VLHRFGFPLYP 1183


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +1

Query: 562  PSPLTPPLXM*VVKRWSSPPRATCGTLTSXLETSPEHPMRSPKAVQXTTLXXPHQRXC 735
            P P T P      +  + PPR T    T  L T+PE P   P     TT+  P +R C
Sbjct: 1120 PEPTTEPSRT-KPEPTTEPPRTTSEPTTEPLRTTPE-PTTEPTTEHVTTV--PRRRGC 1173


>SB_13055| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1140

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +3

Query: 507 KSPSR*XKSSXRIARGQLPQPTDTTSTNVSREEMEFXTQSNVRDVDVXLGDQPRTPNEIP 686
           +SP R      R   G+      TT     REE E   QS+VR  D+    +P TP+  P
Sbjct: 292 RSPQRKPSPVARATVGETTSAKPTTPPGSPREEEEAADQSDVRSDDLF---EPLTPDHSP 348


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,729,866
Number of Sequences: 59808
Number of extensions: 488397
Number of successful extensions: 1365
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1362
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2443309836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)