Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P11
         (1031 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   1.7  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        23   5.1  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    22   6.7  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect(2) = 1.7
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 541 PPPPPPXKXXF 573
           PPPPPP    F
Sbjct: 732 PPPPPPRVESF 742



 Score = 20.6 bits (41), Expect(2) = 1.7
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 535 PXPPPPP 555
           P PPPPP
Sbjct: 731 PPPPPPP 737


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = +2

Query: 308 GGEIFPXPRGEXNPPXXPPPPNKXPXGXKKKPP 406
           GG++F  P    +P    P P + P      PP
Sbjct: 402 GGQMFEAPIPNVSPHYVTPTPPEAPLFQNVLPP 434


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 472 PPPGXKPXXWXXXXXPPLXFXPXPPPPP 555
           P P   P  +     PPL   P  P PP
Sbjct: 160 PGPALPPTGFLCNNYPPLPQVPPLPLPP 187


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,769
Number of Sequences: 336
Number of extensions: 3717
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29382645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)