Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P10
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.22 
SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)          30   2.8  
SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)                   29   3.6  
SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)                29   4.8  
SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)                29   6.4  
SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08)                   29   6.4  
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)                  28   8.4  
SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)                     28   8.4  

>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 33.5 bits (73), Expect = 0.22
 Identities = 33/109 (30%), Positives = 41/109 (37%)
 Frame = +2

Query: 227 QMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLD 406
           Q G G  FGT      GLFG AG N        G +TG  +G         ST +GG   
Sbjct: 48  QTGFGSGFGTTQTTGTGLFGAAGTNTGTGLFGGGTVTGSMFGQPA---SAASTGFGGFGS 104

Query: 407 WANKNAQATIDLNRQIGGRSGMTASGSGVWDLDXNTHFSAGGMVSKEFG 553
            A  N       N    G    T +G+G++       F  GG  +  FG
Sbjct: 105 TAGTNTGGLFG-NTAASG----TTTGTGLFGQTQGAAF--GGTSTSGFG 146


>SB_46683| Best HMM Match : F5_F8_type_C (HMM E-Value=9.6e-12)
          Length = 495

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 34/118 (28%), Positives = 46/118 (38%), Gaps = 4/118 (3%)
 Frame = +2

Query: 260 GQNDDGLFGKAGYNREIFND-DRGKLTGQAYGTR-VLGPGGDSTNYGGRLDWANKNAQAT 433
           G+++    G+AG+ R    D DRG+       TR VL   G  TN GG  +W N      
Sbjct: 300 GEDEVHTAGEAGFRRRYPADFDRGRAKEDVEDTRGVLYWLG--TN-GGLTEWKNPGEAGL 356

Query: 434 IDLNRQIGGRSGMT--ASGSGVWDLDXNTHFSAGGMVSKEFGHKRPDVGLQAEIRHDW 601
           + + R   G    T  A     W    +T          +FG KR  V     +RH W
Sbjct: 357 VTITRSSYGHGKATDAADRRPSW---CSTSNKPNQWWKIDFGDKRTVVANGYRLRHGW 411


>SB_41041| Best HMM Match : PDZ (HMM E-Value=1.3e-40)
          Length = 933

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +2

Query: 179 SGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR 358
           S  +S   P+  +W ++     VF       D  F + G+ R+  ++ RG+    A  T 
Sbjct: 692 SSSTSESSPKRFSWSQENSKDVVFAGPDLPADNPFNREGFGRQSMSEKRGRAAVDAKKTE 751

Query: 359 V 361
           V
Sbjct: 752 V 752


>SB_8869| Best HMM Match : Keratin_B2 (HMM E-Value=0.35)
          Length = 674

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
 Frame = -3

Query: 593 GGSLLEDRRLVFCDRTPSRPYHRQKSGCSYPDPTHRSLMLSSQICHRFVYLGQ*WLVHS- 417
           G    ++RR   C R    PY+R K  C YP+   R   + +  C R  Y  + ++  S 
Sbjct: 43  GRQTYDNRRNTSCCRYT--PYNRLKQICCYPNILPRRYGVYTSCCGRQTYDNRKYICCSG 100

Query: 416 -CSPSLGVRRSWCCR---LQVLKLWCRKPDRLVCRGRH*RSLCCNQLF 285
              P    R + CCR      LK  C  P+ L  R     S C  Q +
Sbjct: 101 RVVPRRFGRNTSCCRYTPYNRLKQICCYPNILPRRYGVYTSCCGRQTY 148



 Score = 28.3 bits (60), Expect = 8.4
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
 Frame = -3

Query: 536 PYHRQKSGCSYPDPTHRSLMLSSQICHRFVYLGQ*WLVHS--CSPSLGVRRSWCCR---L 372
           PY+R K  C YP+   R   + +  C R  Y  + ++  S    P    R + CCR    
Sbjct: 524 PYNRLKQICCYPNILPRRYGVYTSCCGRQTYDNRRYICCSGRVVPRRFGRNTSCCRYTPY 583

Query: 371 QVLKLWCRKPDRLVCR-GRH*RSLCCNQLF 285
             LK  C  P+ L  R G H  S C  Q +
Sbjct: 584 NRLKQICCYPNILPRRYGVH-TSCCVRQTY 612


>SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)
          Length = 206

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +2

Query: 245 VFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNA 424
           VFG+ GQ    LF  +       N+ +  L G  +GT  LG G      G     ++ N 
Sbjct: 85  VFGSTGQPGGSLFVASSPGSGFGNNSQPGLFGTGFGTSQLGQGTGLLGNGTVATASSNNL 144

Query: 425 QAT 433
            AT
Sbjct: 145 PAT 147


>SB_14453| Best HMM Match : rve (HMM E-Value=3.5e-08)
          Length = 244

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +1

Query: 25  REFLRFDIRS*GAKLDTTQNEYKSVLYLRYN 117
           +EF   D+++ G +L +T+NE KS +  R+N
Sbjct: 61  KEFYNKDVKALGVELYSTENEEKSCMVERWN 91


>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1597

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 24/93 (25%), Positives = 35/93 (37%)
 Frame = +2

Query: 143 YGPSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDD 322
           + PS  A+  +      R H +D        G  ++   G NDD  FG +G   + FNDD
Sbjct: 289 HAPSQPADQPTNRSLDCRAHRQDTP------GHGLYSNDGNNDDAHFGDSG-RHDNFNDD 341

Query: 323 RGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKN 421
                G   G         + NY   ++  N N
Sbjct: 342 ISN-DGNLNGGGANNNNNKNNNYNSGINNNNNN 373


>SB_44684| Best HMM Match : Synaphin (HMM E-Value=7.5)
          Length = 141

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 503 DXNTHFSAGGMVSKEFGHKRPDVGLQAEIRHD 598
           + +  F  G ++ +EFGHKRP    +A    D
Sbjct: 64  EMDEEFGIGELIHEEFGHKRPSSSRKAYTSRD 95


>SB_29144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
 Frame = -1

Query: 238 SPHLFVPSDVT-----RVSP*GLPADRVIFRVIRRSVNFCVNTHQSCSEDIKQICIHFE 77
           SPH+    DVT          G    +V FRV+ RS+  C+      S ++ ++C  F+
Sbjct: 36  SPHILATEDVTPDEVVEAVNQGFLRGQVDFRVVARSILCCMRHEPDWSLEVVELCEKFK 94


>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
          Length = 1222

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 302 REIFNDDRGKLTGQAYGT---RVLG-PGGDSTNYGGRLDWANKNAQATI 436
           R ++ND   +L G +      R +  PG   T Y  R+D   KN+Q TI
Sbjct: 633 RTLYNDSDSRLGGMSTSLAEFRTINLPGSSVTKYMERIDEIRKNSQRTI 681


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,884,443
Number of Sequences: 59808
Number of extensions: 567681
Number of successful extensions: 1578
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)