Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P10
         (856 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.4  
Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF039720-9|AAK68360.2|  676|Caenorhabditis elegans Hypothetical ...    29   5.6  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    29   5.6  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 341 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 490
           Q +G    G  GG+  N GG      +N Q T + N   GG  G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 341 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 490
           Q +G    G  GG+  N GG      +N Q T + N   GG  G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 341 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 490
           Q +G    G  GG+  N GG      +N Q T + N   GG  G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215


>Z69383-1|CAA93412.1|  409|Caenorhabditis elegans Hypothetical
           protein F13E9.4 protein.
          Length = 409

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 2/116 (1%)
 Frame = +2

Query: 146 GPSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFG--KAGYNREIFND 319
           G     + +S  GQ S  + + +T    +      G  GQN   + G  + GY       
Sbjct: 32  GYGQQQQGFSGFGQGSATNRQGMTGQGLLESSYQQG-YGQNQGSMQGYSQQGYGGNS-QQ 89

Query: 320 DRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGS 487
           D G    Q  G  V G GG S +YG +     +  Q     N    G SG  ASGS
Sbjct: 90  DYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQGFQSN----GFSGQQASGS 141


>AF078789-1|AAK21515.1|  392|Caenorhabditis elegans Hypothetical
           protein Y44E3B.2 protein.
          Length = 392

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -2

Query: 279 SPSSFCPKVPKTLPPPICLSQVTSRG-CR-LEDCPL 178
           SP  FC   P    PP C+S+V   G CR  ED P+
Sbjct: 321 SPYLFCYIPPNNEHPPSCVSKVRRNGVCRGFEDYPI 356


>AF039720-9|AAK68360.2|  676|Caenorhabditis elegans Hypothetical
           protein F33D11.9b protein.
          Length = 676

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/57 (26%), Positives = 29/57 (50%)
 Frame = -3

Query: 305 LCCNQLFQRVHHRFVPKCQRPCLPPFVCPK*RHEGVALRIAR*SSNLPRNQKVRKLL 135
           L    LF  V+       +   +P  V PK    G+A+++ R  S+LP+++  ++L+
Sbjct: 53  LSAQWLFDPVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELI 109


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/55 (34%), Positives = 23/55 (41%)
 Frame = +2

Query: 233 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 397
           GGG   G  G   DG +G  G+         G + G  YG   +G GG    YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,218,543
Number of Sequences: 27780
Number of extensions: 395539
Number of successful extensions: 1127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)