Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P10
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02425.1 68417.m00328 expressed protein                             35   0.079
At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identic...    31   1.3  
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    29   3.9  
At2g16630.1 68415.m01909 proline-rich family protein contains pr...    29   3.9  
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar...    29   5.2  
At3g24550.1 68416.m03083 protein kinase family protein contains ...    28   6.9  
At1g16260.1 68414.m01947 protein kinase family protein contains ...    28   6.9  
At5g01790.1 68418.m00098 expressed protein                             28   9.1  
At1g21230.1 68414.m02653 wall-associated kinase, putative simila...    28   9.1  

>At4g02425.1 68417.m00328 expressed protein 
          Length = 262

 Score = 34.7 bits (76), Expect = 0.079
 Identities = 19/59 (32%), Positives = 33/59 (55%)
 Frame = +2

Query: 131 NAEVYGPSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNRE 307
           + E++G +++A D S + ++SRR  RD   +K+  GG  FG      D +  ++GY  E
Sbjct: 141 SGELFGEANWASDVSEAARNSRRERRDSGGEKEASGG--FG-FANGVDPMGNESGYGSE 196


>At1g21250.1 68414.m02656 wall-associated kinase 1 (WAK1) identical
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           pathogen infection (PMID:10380805)
          Length = 735

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 185 QSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG-TRV 361
           Q   +H +D    +Q       G L Q   G  G +  + +IF +D  K     Y  +R+
Sbjct: 356 QQRMKHLKDTKLREQFFEQNGGGMLTQRLSGA-GPSNVDVKIFTEDGMKKATNGYAESRI 414

Query: 362 LGPGGDSTNYGGRL 403
           LG GG  T Y G L
Sbjct: 415 LGQGGQGTVYKGIL 428


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 28/119 (23%), Positives = 45/119 (37%)
 Frame = +2

Query: 173 SISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG 352
           S+ G      PR  +W  Q   G  +G +G  +   +G +G          G   G  YG
Sbjct: 277 SVPGAGFGSGPRS-SWGAQAPSG--YGNVGYGNAAPWGGSGGPGSAVMGQAGASAG--YG 331

Query: 353 TRVLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSGVWDLDXNTHFSAG 529
           ++  G GG+ ++YG    +     ++    N   GG       GSG +      +  AG
Sbjct: 332 SQGYGYGGNDSSYGTPSAYGAVGGRSGNMPNNHGGGGYADALDGSGGYGNHQGNNGQAG 390


>At2g16630.1 68415.m01909 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 359

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = -2

Query: 291 AFPKSPSSFCPKVP--KTLPPP 232
           A P  PSSFCPK P    +PPP
Sbjct: 139 AQPVQPSSFCPKPPTAPVMPPP 160


>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
           SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
           {Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
           sapiens] GI:3523150; contains Pfam profiles PF00270:
           DEAD/DEAH box helicase, PF00271: Helicase conserved
           C-terminal domain
          Length = 646

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 314 NDDRGKLTG--QAYGTRVLGPGGDSTNYGGR 400
           N+DRG   G    YG R  G GG  + YGGR
Sbjct: 52  NNDRGGYGGANSGYGGRGQGYGGRGSGYGGR 82


>At3g24550.1 68416.m03083 protein kinase family protein contains
           Pfam domain PF00069: Protein kinase domain
          Length = 652

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
 Frame = +2

Query: 284 GKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTN----YGGRLDWANKNAQATIDLNRQ 451
           G   Y+   +NDD  K    A GT+  G  G+ +N    YG     ++   QAT ++   
Sbjct: 579 GSTDYDTSQYNDDMIKFRKMALGTQEYGTTGEYSNPTSDYGLYPSGSSSEGQATREMEMG 638

Query: 452 IGGRSGMTASG 484
              ++G   SG
Sbjct: 639 KIKKTGQGYSG 649


>At1g16260.1 68414.m01947 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 720

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 257 LGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGGRLD 406
           L Q    L G     +   ++D    T +   +R+LG GG  T Y G L+
Sbjct: 361 LQQQTSFLHGSVNRTKVFSSNDLENATDRFNASRILGQGGQGTVYKGMLE 410


>At5g01790.1 68418.m00098 expressed protein 
          Length = 188

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 294 PAFPKSPSSFCPKVPKTLPPP 232
           P  PK PSS  P +P   PPP
Sbjct: 63  PGTPKHPSSELPTLPPLTPPP 83


>At1g21230.1 68414.m02653 wall-associated kinase, putative similar
           to wall-associated kinase 1 [Arabidopsis thaliana]
           GI:3549626; expressed in leaves and stems & induced by
           salicylic acid or INA (PMID:10380805)
          Length = 733

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 185 QSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYG-TRV 361
           Q   RH ++    +Q       G L Q   G  G +  + +IF ++  K     Y  +R+
Sbjct: 355 QQKMRHRKNTELRQQFFEQNGGGMLIQRLSGA-GPSNVDVKIFTEEGMKEATDGYNESRI 413

Query: 362 LGPGGDSTNYGGRL 403
           LG GG  T Y G L
Sbjct: 414 LGQGGQGTVYKGIL 427


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,318,582
Number of Sequences: 28952
Number of extensions: 377804
Number of successful extensions: 1003
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)