Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P09
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.15 
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    30   0.37 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   0.53 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   0.75 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   3.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   4.5  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   4.5  
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe...    26   7.9  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.9  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    26   7.9  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect(2) = 0.15
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 829 PXPPPPPPP 855
           P PPPPPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 23.4 bits (48), Expect(2) = 0.15
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 829 PXPPPPPP 852
           P PPPPPP
Sbjct: 761 PPPPPPPP 768


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 218 SLWSNLANEMQHLDDMMKELSLKFPSIINEGRV 316
           +L S L      LDD+ K L+L FP++I + RV
Sbjct: 167 ALQSQLVRVNGELDDLQKHLTLSFPTLIAKSRV 199


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect(2) = 0.53
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 829 PXPPPPPPP 855
           P PPPPPPP
Sbjct: 945 PPPPPPPPP 953



 Score = 21.4 bits (43), Expect(2) = 0.53
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 802 SXPLIT*XXPXPPPPPPP 855
           S P I      PPPPP P
Sbjct: 897 SLPTIITHPTPPPPPPLP 914


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 23.8 bits (49), Expect(2) = 0.75
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 835 PPPPPPP 855
           PPPPPPP
Sbjct: 311 PPPPPPP 317



 Score = 23.8 bits (49), Expect(2) = 5.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 835 PPPPPPP 855
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 23.8 bits (49), Expect(2) = 0.75
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 838 PPPPPPP 858
           PPPPPPP
Sbjct: 337 PPPPPPP 343



 Score = 20.6 bits (41), Expect(2) = 5.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +1

Query: 829 PXPPPPP 849
           P PPPPP
Sbjct: 311 PPPPPPP 317


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +2

Query: 197 ESMLDTHSLWSNLANEMQHLDDMMKELSLKFPSIINEGRVEGDKYQISIHLPGYEQKDIN 376
           E   + + +W+++  +MQ  D   ++L   F  I N G++     Q +I L G +  ++ 
Sbjct: 104 EGSTNVNEVWNDITEDMQSQDFSTEDLKQLFLLIFNNGKLR-TLLQNAIVLLGQQTTNVA 162

Query: 377 VKAKN 391
            K  N
Sbjct: 163 SKKLN 167


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 829 PXPPPPPPP 855
           P PPPPPPP
Sbjct: 306 PPPPPPPPP 314


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 189 PPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 829 PXPPPPPPP 855
           P PPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 829 PXPPPPPPP 855
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 829 PXPPPPPPPP 858
           P P PPPPPP
Sbjct: 234 PLPAPPPPPP 243


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 829 PXPPPPPPPP 858
           P  PPPPPPP
Sbjct: 21  PSQPPPPPPP 30


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835  PPPPPPPP 858
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 835 PPPPPPPP 858
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 684 AVEATXYAVXXHRRCGXLAXXPINLIXYTCEXLMYYVPVF 803
           A+E T  A         L    +N+I Y  + ++YYVPV+
Sbjct: 75  AIETTNKADDTQWLTYYLVTSFLNVIEYWSQLILYYVPVY 114


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 829 PXPPPPPPPP 858
           P PPPPPP P
Sbjct: 3   PAPPPPPPAP 12


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
 Frame = +2

Query: 215 HSLWSNLANEMQHLDD--MMKELSL-KFPSI-INEGRVEGDKYQISIHLPGY---EQKDI 373
           H++  N A E   ++D  ++K +S   F S+ + + R  GD + I I        + + I
Sbjct: 573 HTIVPNSAPEHPSINDYKILKPISKGAFGSVYLAQKRTTGDYFAIKILKKSNMIAKNQVI 632

Query: 374 NVKAKNGVLMVQANSAF 424
           NV+A+  +LM Q  S F
Sbjct: 633 NVRAERAILMSQGESPF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,726
Number of Sequences: 5004
Number of extensions: 56831
Number of successful extensions: 265
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)