Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P08
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    31   0.17 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   3.4  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    23   7.2  

>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -2

Query: 282 AIAGPALINPSRTLRPTFSIFLKSFHLGSGAALTAP 175
           AIA P +I+P  ++RP  S+F+KS      A + +P
Sbjct: 202 AIADPNIISPIDSVRPLLSLFIKSITSAISALILSP 237


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 3.4
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 633 FXPPPXXPPPP 665
           + PPP  PPPP
Sbjct: 187 YNPPPPPPPPP 197



 Score = 21.4 bits (43), Expect(2) = 3.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 639 PPPXXPPPPXP 671
           P P  PPPP P
Sbjct: 234 PLPAPPPPPPP 244


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 23.0 bits (47), Expect(2) = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 639 PPPXXPPPP 665
           PPP  PPPP
Sbjct: 775 PPPPPPPPP 783



 Score = 21.0 bits (42), Expect(2) = 7.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 627 ILFXPPPXXPPP 662
           I+  PPP  PPP
Sbjct: 757 IMGGPPPPPPPP 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,628,743
Number of Sequences: 5004
Number of extensions: 45882
Number of successful extensions: 148
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)