Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P07
         (855 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family...    29   3.0  
At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family...    29   3.9  
At1g31810.1 68414.m03904 formin homology 2 domain-containing pro...    29   5.2  

>At3g25690.1 68416.m03197 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At4g04980,
           At5g61090 [Arabidopsis thaliana];  identical to cDNA
           CHUP1 for actin binding protein GI:28071264
          Length = 1004

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = -2

Query: 749 PLXXGGKPXPPPXKXGGGGXFFXXGXXKXPXXKXPLFXGGGG 624
           PL  GG P PPP   GG       G    P     L  G GG
Sbjct: 673 PLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGG 714


>At3g13140.1 68416.m01644 hydroxyproline-rich glycoprotein family
           protein
          Length = 183

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 661 GXFXFPXXKKXPPPPXXXGGGXGFPP 738
           G + +P   + PPPP   GG    PP
Sbjct: 102 GNYAYPSLYQYPPPPHVYGGNYAHPP 127


>At1g31810.1 68414.m03904 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|P48608 Diaphanous protein {Drosophila
           melanogaster}; contains Pfam profile PF02181: Formin
           Homology 2(FH2) Domain
          Length = 1201

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/78 (26%), Positives = 21/78 (26%), Gaps = 1/78 (1%)
 Frame = +3

Query: 624 PPPPXEKGXFXXGXFSXSPXKKXPPPPXFXGGGXGFSXXXKGXXXXFPXXSGXXPXKK-H 800
           PPPP          FS S     PPPP        FS          P  S   P    H
Sbjct: 506 PPPPPPPLFMSTTSFSPSQPPPPPPPPPLFTSTTSFSPSQPPPPPPLPSFSNRDPLTTLH 565

Query: 801 FXXQXGPQKXXPTP*KXP 854
                 P    P P   P
Sbjct: 566 QPINKTPPPPPPPPPPLP 583


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,384,278
Number of Sequences: 28952
Number of extensions: 145923
Number of successful extensions: 526
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)