Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_P05
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 29 1.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 2.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 28 2.1
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.7
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 26 8.6
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/33 (33%), Positives = 13/33 (39%)
Frame = +1
Query: 697 PXSXPLXTPXPKXXSPPPPXPXXSLVSXXPXXP 795
P P+ P P PPPP P + P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Score = 26.6 bits (56), Expect = 4.9
Identities = 16/53 (30%), Positives = 18/53 (33%)
Frame = +1
Query: 697 PXSXPLXTPXPKXXSPPPPXPXXSLVSXXPXXPAXRTGFPPSXXTXTPAPTPP 855
P + + TP P PPP P P P PP P P PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPP-----PPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 739 SPPPPXPXXSLVSXXPXXPAXRTGFPPSXXTXTPAPTPP 855
+PPP P S + P A RT PP TP PP
Sbjct: 390 APPPAIPGRSAPALPPLGNASRTSTPP---VPTPPSLPP 425
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/34 (32%), Positives = 14/34 (41%)
Frame = +1
Query: 742 PPPPXPXXSLVSXXPXXPAXRTGFPPSXXTXTPA 843
PPPP P + P P R+ PP P+
Sbjct: 338 PPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPS 371
Score = 26.6 bits (56), Expect = 4.9
Identities = 21/73 (28%), Positives = 24/73 (32%)
Frame = +1
Query: 637 PPPXMPRKKXXXL*NX*XXXPXSXPLXTPXPKXXSPPPPXPXXSLVSXXPXXPAXRTGFP 816
PPP +P + L S P P P S PP P S P P P
Sbjct: 391 PPPAIPGRSAPALPPLGNASRTSTP---PVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAP 447
Query: 817 PSXXTXTPAPTPP 855
P + AP P
Sbjct: 448 PLPPSAPIAPPLP 460
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/52 (28%), Positives = 18/52 (34%)
Frame = +1
Query: 697 PXSXPLXTPXPKXXSPPPPXPXXSLVSXXPXXPAXRTGFPPSXXTXTPAPTP 852
P S P P +PP P P + P PP+ PAP P
Sbjct: 432 PPSAPPSLPMGAPAAPPLP-PSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAP 482
Score = 25.8 bits (54), Expect = 8.6
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Frame = +1
Query: 697 PXSXPLXTPXPKXXSPPPPXPXXS-----LVSXXPXXPAXRTGFPPSXXTXTPAPTPP 855
P S P P S PP P + L P P G P + AP PP
Sbjct: 420 PPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/53 (30%), Positives = 20/53 (37%)
Frame = +1
Query: 697 PXSXPLXTPXPKXXSPPPPXPXXSLVSXXPXXPAXRTGFPPSXXTXTPAPTPP 855
P P P+ +P PP P S V P P G P + PA + P
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPPMS-VPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/46 (36%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Frame = +1
Query: 721 PXPKXXSPPPPXPXXSLVSXXPXXPAXRTGFP--PSXXTXTPAPTP 852
P PK + PP P S P P G P P T P PTP
Sbjct: 1180 PVPKPAAGVPPVPPPS---EAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/53 (32%), Positives = 17/53 (32%)
Frame = +1
Query: 697 PXSXPLXTPXPKXXSPPPPXPXXSLVSXXPXXPAXRTGFPPSXXTXTPAPTPP 855
P S P P PP P P S P P G PP AP P
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPP-----STAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Score = 26.6 bits (56), Expect = 4.9
Identities = 15/44 (34%), Positives = 15/44 (34%)
Frame = +1
Query: 721 PXPKXXSPPPPXPXXSLVSXXPXXPAXRTGFPPSXXTXTPAPTP 852
P PK PP P S S P P G PP P P
Sbjct: 1160 PVPKPSVAAPPVPAPS--SGIPPVPKPAAGVPPVPPPSEAPPVP 1201
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.1 bits (57), Expect = 3.7
Identities = 12/36 (33%), Positives = 14/36 (38%)
Frame = +1
Query: 697 PXSXPLXTPXPKXXSPPPPXPXXSLVSXXPXXPAXR 804
P + P P P PP P +V P PA R
Sbjct: 889 PVAVPAPIPAPVAEPAPPAAPAKEVVEKAPSPPATR 924
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 8.6
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +1
Query: 193 PDPFFAQPTVGNGYEP-IDNRPYIVNPPKDYNPNGNGYEPIDNGAY 327
P P A + + P +++ PY+ N D+N NGN P+ +Y
Sbjct: 353 PQPASAMKPMASPMLPNVNSMPYLSNG--DHNNNGNTSSPVSRFSY 396
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,964
Number of Sequences: 5004
Number of extensions: 43313
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -