Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P04
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po...    51   2e-07
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo...    42   1e-04
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce...    29   0.63 
SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase |Schiz...    28   1.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    27   4.4  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    27   4.4  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   5.9  

>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 28/51 (54%), Positives = 32/51 (62%)
 Frame = +3

Query: 597 MQNASFSTLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           +  A F   GGSV DR AY +  DA +KG L  G   IVE T+GNTGIGLA
Sbjct: 41  LAKAEFQNPGGSVKDRAAYYVVRDAEKKGKLSRG-GTIVEGTAGNTGIGLA 90


>SPAC3A12.17c |cys12|cys1b|cysteine synthase
           Cys12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 4/150 (2%)
 Frame = +2

Query: 413 DAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILN----VIGNTPLVKLSKLPKDEG 580
           D  +G +  A   + L+ +   +R       +  DI+N    +IGNT +V++  L +  G
Sbjct: 7   DLASGIAMGAVFMYLLRRLYESLRVKSSADSLEEDIVNGVEGLIGNTKMVRIKSLSQATG 66

Query: 581 LKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGYFEAWQVSHSRTHIW*HRNRTGPWPL 760
             C++ AK EFLNPG       +L  +      G    +Q +            +     
Sbjct: 67  --CDILAKAEFLNPGNSPKDRVALQMIRTAEENGDLVPYQSNAVYEGTAGSTGISIAMLC 124

Query: 761 LSXGTGAIIXLPEKMSDEKVTPLVALGAEI 850
            S G  + I +P   S EK   L  LGA +
Sbjct: 125 CSLGYDSRIYMPSDQSKEKSDILELLGAHV 154


>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 510

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)
 Frame = +2

Query: 389 NSNMSNHVDAKNGTSNSARKFFTLKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLP 568
           N + + H+  +  T+ +++K   L +  H V + +  +  + D+L       L+KL  LP
Sbjct: 77  NRHAAAHIPQR--TTKTSQKLVLLPEN-HAVNSFNEEESNYEDLLTPSDAYNLIKLENLP 133

Query: 569 KD--EGL---KCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGYFE 691
           +D  E L   +   Y  CE     +++   H L H    R + Y E
Sbjct: 134 RDKREELGFPRATAYCVCEAFQLPKVK---HFLKHYHKVRAKKYDE 176


>SPAC922.03 |||1-aminocyclopropane-1-carboxylate deaminase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 533 GNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 625
           G TP+  + +L K  G K E++AK E  N G
Sbjct: 14  GPTPITSMKRLSKTLGGKVEIFAKREDCNSG 44


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 386 INSNMSNHVDAKNGTSNSARKFFTLKDMP 472
           INSN+SN +D+ +  ++SA   F   D+P
Sbjct: 157 INSNISNSLDSVSQHNSSADSLFVNGDVP 185


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 389 NSNMSNHVDAKNGTSNSARKFFT 457
           N+N SN+ +  NGT  +A+ FFT
Sbjct: 321 NNNNSNNNNGNNGTVPNAKTFFT 343


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +2

Query: 611 FLNPGRIRXRPHSLPHVSGCRXEGYFEAWQVSHSRTHIW*HRNRTGPWPLLSXGTGAII 787
           FL P +   +   + +++       + ++Q  HS  H + H+N T    +LS  +G I+
Sbjct: 306 FLLPAQASRKTQKIHYINDNDPSNSYSSYQ--HSHVHDFIHKNNTHSNRVLSQSSGPIV 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,337,600
Number of Sequences: 5004
Number of extensions: 67763
Number of successful extensions: 133
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)