Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P04
         (850 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   3e-11
SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)                    49   4e-06
SB_18116| Best HMM Match : PALP (HMM E-Value=0)                        49   4e-06
SB_37903| Best HMM Match : Pre-SET (HMM E-Value=0.11)                  37   0.018
SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)                   37   0.018
SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.018
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.055
SB_40999| Best HMM Match : SAM_1 (HMM E-Value=7.9)                     34   0.13 
SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67)              34   0.13 
SB_40180| Best HMM Match : Pre-SET (HMM E-Value=0.11)                  34   0.13 
SB_32670| Best HMM Match : CIMR (HMM E-Value=0)                        31   1.2  
SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)              30   2.7  
SB_41622| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_41621| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_22425| Best HMM Match : PigN (HMM E-Value=0)                        29   4.8  
SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.3  
SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.3  
SB_8578| Best HMM Match : DUF807 (HMM E-Value=6.7)                     28   8.3  

>SB_2393| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 47/115 (40%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
 Frame = +2

Query: 515 DILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGYFEA 694
           +IL  IG+TPLV+++ + K  GLKCE+ AKCEF N G        L  +     EG    
Sbjct: 3   NILQKIGDTPLVRINNIGKTYGLKCELLAKCEFFNAGGSVKDRIGLRMIEEAEREG---- 58

Query: 695 WQVSHSRTHIW*HRNRTGPWPLLSX---GTGAIIXLPEKMSDEKVTPLVALGAEI 850
            ++    T I      TG    L+    G   II +PEKMS+EKV  L ALGAEI
Sbjct: 59  -RLKPGDTLIEPTSGNTGIGLALAAAVKGYRCIIVMPEKMSNEKVDVLRALGAEI 112



 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 31/57 (54%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
 Frame = +3

Query: 588 VKC--MQNASFSTLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLAL 752
           +KC  +    F   GGSV DRI  RM  +A ++G LKPG   ++EPTSGNTGIGLAL
Sbjct: 25  LKCELLAKCEFFNAGGSVKDRIGLRMIEEAEREGRLKPG-DTLIEPTSGNTGIGLAL 80


>SB_32365| Best HMM Match : PALP (HMM E-Value=0.064)
          Length = 129

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
 Frame = +3

Query: 588 VKC--MQNASFSTLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLAL 752
           +KC  +    F    GS+ DRI  RM  DA +   +KPG ++I EPTSGNTGI LAL
Sbjct: 8   LKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLI-EPTSGNTGIALAL 63



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +2

Query: 578 GLKCEMYAKCEFLNP-GRIRXR 640
           GLKCE+ AKCEF+NP G ++ R
Sbjct: 7   GLKCEVVAKCEFMNPVGSLKDR 28


>SB_18116| Best HMM Match : PALP (HMM E-Value=0)
          Length = 470

 Score = 49.2 bits (112), Expect = 4e-06
 Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
 Frame = +3

Query: 588 VKC--MQNASFSTLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLAL 752
           +KC  +    F    GS+ DRI  RM  DA +   +KPG ++I EPTSGNTGI LAL
Sbjct: 8   LKCEVVAKCEFMNPVGSLKDRIGVRMIEDAERDNHIKPGDTLI-EPTSGNTGIALAL 63



 Score = 34.3 bits (75), Expect = 0.13
 Identities = 14/22 (63%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +2

Query: 578 GLKCEMYAKCEFLNP-GRIRXR 640
           GLKCE+ AKCEF+NP G ++ R
Sbjct: 7   GLKCEVVAKCEFMNPVGSLKDR 28


>SB_37903| Best HMM Match : Pre-SET (HMM E-Value=0.11)
          Length = 220

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 512 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAK-CEFLNPGRIRXRPHSLPHVS 664
           +DI    G T L+ L K  KDE L    YA+ C+ ++ G  + RP SLP +S
Sbjct: 69  NDIAAAAGETALLCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQIS 120


>SB_2690| Best HMM Match : Pre-SET (HMM E-Value=0.11)
          Length = 715

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 512 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAK-CEFLNPGRIRXRPHSLPHVS 664
           +DI    G T L+ L K  KDE L    YA+ C+ ++ G  + RP SLP +S
Sbjct: 564 NDIAAAAGETALLCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQIS 615


>SB_2462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 571

 Score = 37.1 bits (82), Expect = 0.018
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 512 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAK-CEFLNPGRIRXRPHSLPHVS 664
           +DI    G T L+ L K  KDE L    YA+ C+ ++ G  + RP SLP +S
Sbjct: 420 NDIAAAAGETDLLCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQIS 471


>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 987

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 1/98 (1%)
 Frame = +2

Query: 533 GNTPLVKLSKLPKDEGLKCEMYAK-CEFLNPGRIRXRPHSLPHVSGCRXEGYFEAWQVSH 709
           G T L+ L K  KDE L    YA+ C+ ++ G  + RP SLP +S          +   H
Sbjct: 515 GETALLCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQISAAAIYHSLRVYHQVH 574

Query: 710 SRTHIW*HRNRTGPWPLLSXGTGAIIXLPEKMSDEKVT 823
               I  H     P    + G GA   L  + +D  VT
Sbjct: 575 GGESIQLHHFSDAP----TEGYGAASYLRVQDTDCVVT 608


>SB_40999| Best HMM Match : SAM_1 (HMM E-Value=7.9)
          Length = 233

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 533 GNTPLVKLSKLPKDEGLKCEMYAK-CEFLNPGRIRXRPHSLPHVS 664
           G T L+ L K  KDE L    YA+ C+ ++ G  + RP SLP +S
Sbjct: 170 GETALLCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQIS 214


>SB_18632| Best HMM Match : Nitrophorin (HMM E-Value=0.67)
          Length = 258

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 533 GNTPLVKLSKLPKDEGLKCEMYAK-CEFLNPGRIRXRPHSLPHVS 664
           G T L+ L K  KDE L    YA+ C+ ++ G  + RP SLP +S
Sbjct: 162 GETALLCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQIS 206


>SB_40180| Best HMM Match : Pre-SET (HMM E-Value=0.11)
          Length = 291

 Score = 34.3 bits (75), Expect = 0.13
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 512 SDILNVIGNTPLVKLSKLPKDEGLKCEMYAK-CEFLNPGRIRXRPHSLPHVS 664
           +DI    G   L+ L K  KDE L    YA+ C+ ++ G  + RP SLP +S
Sbjct: 140 NDIAAAAGERVLLCLYKGLKDETLDSLRYARFCQKISTGNTQVRPESLPQIS 191


>SB_32670| Best HMM Match : CIMR (HMM E-Value=0)
          Length = 1441

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 424 WHIELCEKILYTKGHASHCKGTGSKSEGT 510
           +HI +C +I  T GH  HC    +   GT
Sbjct: 196 FHINICREITPTTGHTQHCPAGSAACNGT 224


>SB_7613| Best HMM Match : DNA_pol3_beta (HMM E-Value=4.9)
          Length = 641

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +3

Query: 177 LYTPWLEHLERTVNYCKRIIYTARF 251
           LY P +EH   T  YC RI+Y   F
Sbjct: 58  LYLPDMEHKHDTARYCHRILYLYAF 82


>SB_41622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 542 PLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGYFEAWQVSHS 712
           P  KLS  P + G  CEM  K EF +   I+   + LP  +  R  GY + +    S
Sbjct: 413 PYTKLSASPYNSGF-CEMQLKGEFFSDEVIKSIANMLPLGTLWRRSGYLDFYVTGDS 468


>SB_41621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 115

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +2

Query: 542 PLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGYFEAWQVSHS 712
           P  KLS  P + G  CEM  K EF +   I+   + LP  +  R  GY + +    S
Sbjct: 7   PYTKLSASPYNSGF-CEMQLKGEFFSDEVIKSIANMLPLGTLWRRSGYLDFYVTGDS 62


>SB_22425| Best HMM Match : PigN (HMM E-Value=0)
          Length = 913

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 511 MYLLISIQCPYNVRHVL*CKEFSRRV--RCAIFSIHMVRHVAVYRFYCLYLKFT 356
           +Y  +++  P+ +  +L CK     V   CA  ++H+VR V VY  + + L  T
Sbjct: 799 VYCFMTVFSPFLMGTLLLCKVVVPFVIVTCAFDAVHLVRQVPVYSLFLVVLVLT 852


>SB_28110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 257

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 509 VPSDFDPVPLQCEACPLV*RIFSQSSMCHF*HPHGSTCCCLSFLLLVFKI 360
           V  +FD +P     C +V  + S SSM  F H H S  C + FLL + ++
Sbjct: 157 VAREFDGIPSPLVVCDIVHLLSSASSMA-FRH-HFSLSCPMEFLLPLLQV 204


>SB_36867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 232

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -3

Query: 509 VPSDFDPVPLQCEACPLV*RIFSQSSMCHF*HPHGSTCCCLSFLLLVFKI 360
           V  +FD +P     C +V  + S SSM  F H H S  C + FLL + ++
Sbjct: 132 VAREFDGIPSLLVVCDIVHLLSSASSMA-FRH-HFSLSCPMEFLLPLLQV 179


>SB_5495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 247

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 84  YLTTHTQYYKYPTSINLSFS*IPFIQEET*LLYTPWLEHLERTVNYC 224
           +L  H +  KYPTS +   S  P I   T L +     H   T+N+C
Sbjct: 148 FLREHQETLKYPTSPSAPSSSSPIIFRRTPLGFAEDSTHHPLTLNHC 194


>SB_8578| Best HMM Match : DUF807 (HMM E-Value=6.7)
          Length = 139

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +3

Query: 84  YLTTHTQYYKYPTSINLSFS*IPFIQEET*LLYTPWLEHLERTVNYC 224
           +L  H +  KYPTS +   S  P I   T L +     H   T+N+C
Sbjct: 71  FLREHQETLKYPTSPSAPSSSSPIIFRRTPLGFAEDSTHHPLTLNHC 117


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,681,569
Number of Sequences: 59808
Number of extensions: 493081
Number of successful extensions: 979
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2407378809
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)