Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_P04
(850 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical ... 59 5e-09
Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 56 3e-08
Z83236-2|CAB05778.1| 337|Caenorhabditis elegans Hypothetical pr... 52 5e-07
AF016425-2|AAB65342.1| 337|Caenorhabditis elegans Hypothetical ... 47 1e-05
Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical p... 47 2e-05
U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical pr... 46 4e-05
U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily a... 31 1.4
U64840-4|AAB04962.1| 316|Caenorhabditis elegans Serpentine rece... 29 4.2
AF016428-1|AAO26001.1| 330|Caenorhabditis elegans Serpentine re... 29 4.2
Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical pr... 28 7.3
>AC024136-1|AAF35961.1| 755|Caenorhabditis elegans Hypothetical
protein F54A3.4 protein.
Length = 755
Score = 58.8 bits (136), Expect = 5e-09
Identities = 44/118 (37%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Frame = +2
Query: 506 VHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGY 685
V +L+ IG TPLVKL +PK G++C +Y KCEFLN G + V G
Sbjct: 336 VLDSVLDAIGKTPLVKLQHVPKAHGVRCNVYVKCEFLNAGGSTKDRIAKKMVEIAEKTGK 395
Query: 686 FEAWQVSHSRTHIW*HRNRTGPWPLL---SXGTGAIIXLPEKMSDEKVTPLVALGAEI 850
A + T I TG L G +I +PEKMS EK T L LG+ I
Sbjct: 396 PGA-LTPGATTLIEPTSGNTGIGLSLVAAVRGYKCLITMPEKMSKEKSTTLSVLGSTI 452
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/58 (50%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Frame = +3
Query: 588 VKCMQNASFSTLGGSVXDRIAYRMFLDAXQKG---ILKPGKSVIVEPTSGNTGIGLAL 752
VKC F GGS DRIA +M A + G L PG + ++EPTSGNTGIGL+L
Sbjct: 367 VKC----EFLNAGGSTKDRIAKKMVEIAEKTGKPGALTPGATTLIEPTSGNTGIGLSL 420
Score = 27.9 bits (59), Expect = 9.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 539 TPLVKLSKLPKDEGLKCEMYAKCEFLN 619
T LV L KL + LK ++Y K E+LN
Sbjct: 21 TQLVPLKKLKAEFQLKSDIYVKLEYLN 47
>Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 56.0 bits (129), Expect = 3e-08
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +2
Query: 518 ILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGYFEAW 697
+L+ IG TPLVKL +PK G+KC +Y KCE++N G + V G +
Sbjct: 382 VLDAIGKTPLVKLQHIPKAHGVKCNVYVKCEYMNAGGSTKDRIAKRMVEIAEKTG--KPG 439
Query: 698 QVSHSRTHIW*HRNRTGPWPLLS---XGTGAIIXLPEKMSDEKVTPLVALGAEI 850
++ T I TG L+ G II +P+KMS EK + +LG+ I
Sbjct: 440 KLVPGVTLIEPTSGNTGIGLSLASAVRGYKCIITMPKKMSKEKSIAMASLGSTI 493
Score = 48.4 bits (110), Expect = 6e-06
Identities = 31/61 (50%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = +3
Query: 588 VKC--MQNASFSTLGGSVXDRIAYRMFLDAXQKGILKPGKSV----IVEPTSGNTGIGLA 749
VKC + GGS DRIA RM A + G KPGK V ++EPTSGNTGIGL+
Sbjct: 403 VKCNVYVKCEYMNAGGSTKDRIAKRMVEIAEKTG--KPGKLVPGVTLIEPTSGNTGIGLS 460
Query: 750 L 752
L
Sbjct: 461 L 461
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 539 TPLVKLSKLPKDEGLKCEMYAKCEFLN 619
TPLV L KL + L+ ++Y K E+LN
Sbjct: 30 TPLVPLKKLKVEHQLQSDIYVKLEYLN 56
>Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 56.0 bits (129), Expect = 3e-08
Identities = 39/114 (34%), Positives = 56/114 (49%), Gaps = 3/114 (2%)
Frame = +2
Query: 518 ILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEGYFEAW 697
+L+ IG TPLVKL +PK G+KC +Y KCE++N G + V G +
Sbjct: 382 VLDAIGKTPLVKLQHIPKAHGVKCNVYVKCEYMNAGGSTKDRIAKRMVEIAEKTG--KPG 439
Query: 698 QVSHSRTHIW*HRNRTGPWPLLS---XGTGAIIXLPEKMSDEKVTPLVALGAEI 850
++ T I TG L+ G II +P+KMS EK + +LG+ I
Sbjct: 440 KLVPGVTLIEPTSGNTGIGLSLASAVRGYKCIITMPKKMSKEKSIAMASLGSTI 493
Score = 48.4 bits (110), Expect = 6e-06
Identities = 31/61 (50%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Frame = +3
Query: 588 VKC--MQNASFSTLGGSVXDRIAYRMFLDAXQKGILKPGKSV----IVEPTSGNTGIGLA 749
VKC + GGS DRIA RM A + G KPGK V ++EPTSGNTGIGL+
Sbjct: 403 VKCNVYVKCEYMNAGGSTKDRIAKRMVEIAEKTG--KPGKLVPGVTLIEPTSGNTGIGLS 460
Query: 750 L 752
L
Sbjct: 461 L 461
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 539 TPLVKLSKLPKDEGLKCEMYAKCEFLN 619
TPLV L KL + L+ ++Y K E+LN
Sbjct: 30 TPLVPLKKLKVEHQLQSDIYVKLEYLN 56
>Z83236-2|CAB05778.1| 337|Caenorhabditis elegans Hypothetical
protein K10H10.2 protein.
Length = 337
Score = 52.0 bits (119), Expect = 5e-07
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +3
Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
SV DRIA+ M A + G++ PGK+V++EPTSGN GI LA
Sbjct: 45 SVKDRIAFNMIDTAEKAGLITPGKTVLIEPTSGNMGIALA 84
Score = 34.7 bits (76), Expect = 0.084
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = +2
Query: 527 VIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
+IGNTPL+KL+K+ KD G + K E++NP
Sbjct: 13 LIGNTPLLKLNKIGKDLG--ASIAVKVEYMNP 42
>AF016425-2|AAB65342.1| 337|Caenorhabditis elegans Hypothetical
protein F59A7.9 protein.
Length = 337
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA-LGR 758
SV DRIA M DA + G + PGK+V+VE TSGN GI LA +GR
Sbjct: 45 SVKDRIAKTMVDDAEKAGKIVPGKTVLVEGTSGNLGIALAHIGR 88
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/45 (42%), Positives = 25/45 (55%)
Frame = +2
Query: 488 LDRNQKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
+ R VH D + +GNTPLV L + K GL + K E+LNP
Sbjct: 1 MSRELMVH-DSGDTVGNTPLVLLRNITK--GLDARIAVKIEYLNP 42
>Z78415-10|CAB01676.2| 341|Caenorhabditis elegans Hypothetical
protein C17G1.7 protein.
Length = 341
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +3
Query: 627 GSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
GSV DRI M A + G + PG + ++EPTSGNTGI LA
Sbjct: 45 GSVKDRIGAAMLAAAEKDGTVIPGVTTLIEPTSGNTGIALA 85
Score = 36.3 bits (80), Expect = 0.028
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 4/124 (3%)
Frame = +2
Query: 491 DRNQKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP-GRIRXRPHSLPHVSG 667
DRN + + +IGNTP+V ++KL K GL + K E++NP G ++ R ++
Sbjct: 3 DRNS-IGENAAALIGNTPMVYINKLTK--GLPGTVAVKIEYMNPAGSVKDR-IGAAMLAA 58
Query: 668 CRXEGYFEAWQVSHSRTHIW*HRNRTG---PWPLLSXGTGAIIXLPEKMSDEKVTPLVAL 838
+G + T I TG + + G I+ +P MS E+ T L A
Sbjct: 59 AEKDGTV----IPGVTTLIEPTSGNTGIALAFVAAAKGYRCIVTMPASMSGERRTLLKAY 114
Query: 839 GAEI 850
G+E+
Sbjct: 115 GSEV 118
>U97004-6|AAO26010.1| 304|Caenorhabditis elegans Hypothetical
protein R08E5.2c protein.
Length = 304
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +3
Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
SV DRIA M +A + G + PGK+V+VE TSGN GI LA
Sbjct: 45 SVKDRIAKSMVDEAEKAGTIVPGKTVLVEGTSGNLGIALA 84
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 524 NVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
+ IGNTPLV L + K GL + K E+LNP
Sbjct: 12 DTIGNTPLVLLRNISK--GLDARIAVKVEYLNP 42
>U97004-4|AAB52276.1| 337|Caenorhabditis elegans Hypothetical
protein R08E5.2a protein.
Length = 337
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/40 (57%), Positives = 28/40 (70%)
Frame = +3
Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
SV DRIA M +A + G + PGK+V+VE TSGN GI LA
Sbjct: 45 SVKDRIAKSMVDEAEKAGTIVPGKTVLVEGTSGNLGIALA 84
Score = 31.5 bits (68), Expect = 0.78
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +2
Query: 524 NVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
+ IGNTPLV L + K GL + K E+LNP
Sbjct: 12 DTIGNTPLVLLRNISK--GLDARIAVKVEYLNP 42
>AC006731-1|AAF60483.1| 4900|Caenorhabditis elegans Temporarily
assigned gene nameprotein 80 protein.
Length = 4900
Score = 30.7 bits (66), Expect = 1.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 627 LPGLRNSHFAYISHFNPSSLGNLDSFTS 544
LP LR + Y SHF+PS + +L S TS
Sbjct: 4616 LPPLRRTSITYTSHFSPSVIRDLRSSTS 4643
>U64840-4|AAB04962.1| 316|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 68 protein.
Length = 316
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 392 CLSFLLLVFKIHNSLLYQFTQLAFQFNFFILFN 294
C FLL + K++ + Y+ QLA N F+ N
Sbjct: 38 CFQFLLGISKVYANSFYRLVQLALLTNTFVYLN 70
>AF016428-1|AAO26001.1| 330|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 66 protein.
Length = 330
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 392 CLSFLLLVFKIHNSLLYQFTQLAFQFNFFILFN 294
C FLL + K++ + Y+ QLA N F+ N
Sbjct: 38 CFQFLLGISKVYANSFYRLVQLALLTNTFVYLN 70
>Z70683-3|CAA94589.1| 435|Caenorhabditis elegans Hypothetical
protein F13B12.4 protein.
Length = 435
Score = 28.3 bits (60), Expect = 7.3
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 615 STLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLALGRCCXXVQVP 782
+T ++ R A+ + L A +G + S + + TSGNTG A C V VP
Sbjct: 82 ATATRTLKHRFAWALLLWAITEGKVTSKTSAVYDSTSGNTGSAEAY--MCTLVNVP 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,567,143
Number of Sequences: 27780
Number of extensions: 385235
Number of successful extensions: 908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -