Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P04
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    82   5e-18
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   2.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.2  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   8.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 82.2 bits (194), Expect = 5e-18
 Identities = 52/131 (39%), Positives = 70/131 (53%), Gaps = 4/131 (3%)
 Frame = +2

Query: 470 PHIVRALDRNQ-KVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPH 646
           PH  R  + +  K+  DIL  IG TPL+KL+ +PK  G+KCE+YAKCEFLNPG       
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDRI 81

Query: 647 SLPHVSGCRXEGYFEAWQVSHSRTHIW*HRNRTGPWPLLS---XGTGAIIXLPEKMSDEK 817
           +   +     +G  +        T I      TG    ++    G   II +PEKMSDEK
Sbjct: 82  AYRMIQDAEDKGLLKP-----GCTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEK 136

Query: 818 VTPLVALGAEI 850
           ++ L ALGA+I
Sbjct: 137 ISTLYALGAKI 147



 Score = 68.5 bits (160), Expect = 7e-14
 Identities = 36/61 (59%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
 Frame = +3

Query: 576 KD*NVKC--MQNASFSTLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           K   +KC       F   GGSV DRIAYRM  DA  KG+LKPG   I+EPTSGNTGIGLA
Sbjct: 56  KSYGIKCEIYAKCEFLNPGGSVKDRIAYRMIQDAEDKGLLKPG-CTIIEPTSGNTGIGLA 114

Query: 750 L 752
           +
Sbjct: 115 M 115


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 436 VRCAIFSIHMVRHVAVYRFYCLYLKFTIHYCINL 335
           V  ++ + H+  H  VY++ C    +   YC +L
Sbjct: 27  VNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 409 MVRHVAVYRFYCLYLKFTIHYCINL 335
           M R +A +R + LYL   +  CI++
Sbjct: 110 MCRIMAFFRMFGLYLSSFVLVCISM 134


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -3

Query: 824 GLLFHLTFSQATX*WHLYXXTAAA--KGQSDSCVTRCG 717
           GLLFH   +  T  W L     AA  +G   + +T  G
Sbjct: 322 GLLFHALITLPTIFWFLTRQNPAAFFRGMMQAWMTALG 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,753
Number of Sequences: 438
Number of extensions: 4665
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)