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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P04
         (850 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59760.3 68416.m06669 cysteine synthase, mitochondrial, putat...    65   5e-11
At3g59760.2 68416.m06668 cysteine synthase, mitochondrial, putat...    65   5e-11
At3g59760.1 68416.m06667 cysteine synthase, mitochondrial, putat...    65   5e-11
At3g22460.1 68416.m02839 cysteine synthase, putative / O-acetyls...    64   1e-10
At4g14880.2 68417.m02286 cysteine synthase / O-acetylserine (thi...    62   3e-10
At4g14880.1 68417.m02285 cysteine synthase / O-acetylserine (thi...    62   3e-10
At5g28020.2 68418.m03375 cysteine synthase, putative / O-acetyls...    62   5e-10
At5g28020.1 68418.m03374 cysteine synthase, putative / O-acetyls...    62   5e-10
At2g43750.1 68415.m05439 cysteine synthase, chloroplast / O-acet...    62   6e-10
At5g28030.2 68418.m03377 cysteine synthase, putative / O-acetyls...    58   7e-09
At5g28030.1 68418.m03376 cysteine synthase, putative / O-acetyls...    58   7e-09
At3g04940.1 68416.m00536 cysteine synthase, putative / O-acetyls...    58   7e-09
At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putativ...    48   8e-06
At3g61440.1 68416.m06881 cysteine synthase, putative / O-acetyls...    48   1e-05
At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme...    45   7e-05
At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme...    45   7e-05
At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to hi...    29   3.0  
At3g60400.1 68416.m06755 mitochondrial transcription termination...    29   3.9  
At3g14980.1 68416.m01894 PHD finger transcription factor, putati...    28   9.0  

>At3g59760.3 68416.m06669 cysteine synthase, mitochondrial, putative
           / O-acetylserine (thiol)-lyase, putative /
           O-acetylserine sulfhydrylase, putative similar to
           SP|Q43725 Cysteine synthase, mitochondrial precursor (EC
           4.2.99.8) (O- acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}
          Length = 430

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 30/40 (75%), Positives = 32/40 (80%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI Y M  DA QKG + PGKSV+VEPTSGNTGIGLA
Sbjct: 152 SVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191


>At3g59760.2 68416.m06668 cysteine synthase, mitochondrial, putative
           / O-acetylserine (thiol)-lyase, putative /
           O-acetylserine sulfhydrylase, putative similar to
           SP|Q43725 Cysteine synthase, mitochondrial precursor (EC
           4.2.99.8) (O- acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}
          Length = 432

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 30/40 (75%), Positives = 32/40 (80%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI Y M  DA QKG + PGKSV+VEPTSGNTGIGLA
Sbjct: 152 SVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191


>At3g59760.1 68416.m06667 cysteine synthase, mitochondrial, putative
           / O-acetylserine (thiol)-lyase, putative /
           O-acetylserine sulfhydrylase, putative similar to
           SP|Q43725 Cysteine synthase, mitochondrial precursor (EC
           4.2.99.8) (O- acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) {Arabidopsis thaliana}
          Length = 433

 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 30/40 (75%), Positives = 32/40 (80%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI Y M  DA QKG + PGKSV+VEPTSGNTGIGLA
Sbjct: 152 SVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLA 191


>At3g22460.1 68416.m02839 cysteine synthase, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative nearly identical over 185 amino
           acids to SP|P47998 Cysteine synthase (EC 4.2.99.8)
           (O-acetylserine sulfhydrylase) (O-acetylserine
           (Thiol)-lyase) {Arabidopsis thaliana}
          Length = 188

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 27/40 (67%), Positives = 33/40 (82%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI Y M  DA  KG++KPG+SV++EPTSGNTG+GLA
Sbjct: 47  SVKDRIGYSMIADAEAKGLIKPGESVLIEPTSGNTGVGLA 86



 Score = 33.1 bits (72), Expect = 0.24
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 503 KVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
           K+  D+  +IGNTPLV L+K+ KD      + AK E + P
Sbjct: 7   KIAKDVTELIGNTPLVYLNKVAKD--CVGHVAAKLEMMEP 44


>At4g14880.2 68417.m02286 cysteine synthase / O-acetylserine
           (thiol)-lyase / O-acetylserine sulfhydrylase (OAS1)
           nearly identical to SP|P47998 Cysteine synthase (EC
           4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine
           (Thiol)-lyase) {Arabidopsis thaliana}; identical to cDNA
           O-acetylserine lyase (At.OAS.5-8) GI:6983573
          Length = 322

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI + M  DA +KG++KPG+SV++EPTSGNTG+GLA
Sbjct: 44  SVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLA 83



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
 Frame = +2

Query: 503 KVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEG 682
           ++  D+  +IGNTPLV L+ +   EG    + AK E + P            +S    +G
Sbjct: 4   RIAKDVTELIGNTPLVYLNNVA--EGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKG 61

Query: 683 YFEAWQVSHSRTHIW*HRNRTG---PWPLLSXGTGAIIXLPEKMSDEKVTPLVALGAEI 850
             +  +       I      TG    +   + G   II +P  MS E+   L+A G E+
Sbjct: 62  LIKPGE----SVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVEL 116


>At4g14880.1 68417.m02285 cysteine synthase / O-acetylserine
           (thiol)-lyase / O-acetylserine sulfhydrylase (OAS1)
           nearly identical to SP|P47998 Cysteine synthase (EC
           4.2.99.8) (O-acetylserine sulfhydrylase) (O-acetylserine
           (Thiol)-lyase) {Arabidopsis thaliana}; identical to cDNA
           O-acetylserine lyase (At.OAS.5-8) GI:6983573
          Length = 322

 Score = 62.5 bits (145), Expect = 3e-10
 Identities = 26/40 (65%), Positives = 34/40 (85%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI + M  DA +KG++KPG+SV++EPTSGNTG+GLA
Sbjct: 44  SVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLA 83



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
 Frame = +2

Query: 503 KVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIRXRPHSLPHVSGCRXEG 682
           ++  D+  +IGNTPLV L+ +   EG    + AK E + P            +S    +G
Sbjct: 4   RIAKDVTELIGNTPLVYLNNVA--EGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKG 61

Query: 683 YFEAWQVSHSRTHIW*HRNRTG---PWPLLSXGTGAIIXLPEKMSDEKVTPLVALGAEI 850
             +  +       I      TG    +   + G   II +P  MS E+   L+A G E+
Sbjct: 62  LIKPGE----SVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVEL 116


>At5g28020.2 68418.m03375 cysteine synthase, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative similar to O-acetylserine(thiol)
           lyase (EC 4.2.99.8) [Brassica juncea] GI:2245144;
           contains Pfam profile PF00291: Pyridoxal-phosphate
           dependent enzyme
          Length = 323

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRIAY M  DA  KG++ PGKS ++EPT+GNTGIGLA
Sbjct: 46  SVKDRIAYSMIKDAEDKGLITPGKSTLIEPTAGNTGIGLA 85



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 506 VHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
           + +DI  +IGNTP+V L+ +   +G    + AK E + P
Sbjct: 7   IKNDITELIGNTPMVYLNNVV--DGCVARIAAKLEMMEP 43


>At5g28020.1 68418.m03374 cysteine synthase, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative similar to O-acetylserine(thiol)
           lyase (EC 4.2.99.8) [Brassica juncea] GI:2245144;
           contains Pfam profile PF00291: Pyridoxal-phosphate
           dependent enzyme
          Length = 323

 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 27/40 (67%), Positives = 32/40 (80%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRIAY M  DA  KG++ PGKS ++EPT+GNTGIGLA
Sbjct: 46  SVKDRIAYSMIKDAEDKGLITPGKSTLIEPTAGNTGIGLA 85



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +2

Query: 506 VHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
           + +DI  +IGNTP+V L+ +   +G    + AK E + P
Sbjct: 7   IKNDITELIGNTPMVYLNNVV--DGCVARIAAKLEMMEP 43


>At2g43750.1 68415.m05439 cysteine synthase, chloroplast /
           O-acetylserine (thiol)-lyase / O-acetylserine
           sulfhydrylase / cpACS1 (OASB) identical to SP|P47999
           Cysteine synthase, chloroplast precursor (EC 4.2.99.8)
           (O-acetylserine sulfhydrylase) (O-acetylserine
           (Thiol)-lyase) (cpACS1) {Arabidopsis thaliana};
           identical to cDNA O-acetylserine lyase (At.OAS.7-4)
           GI:6983575
          Length = 392

 Score = 61.7 bits (143), Expect = 6e-10
 Identities = 28/40 (70%), Positives = 32/40 (80%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI Y M  DA +KG++ PGKSV+VE TSGNTGIGLA
Sbjct: 114 SVKDRIGYSMITDAEEKGLITPGKSVLVESTSGNTGIGLA 153


>At5g28030.2 68418.m03377 cysteine synthase, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative similar to O-acetylserine(thiol)
           lyase [Brassica juncea] GI:2245144; contains Pfam
           profile PF00291: Pyridoxal-phosphate dependent enzyme
          Length = 323

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 25/40 (62%), Positives = 30/40 (75%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           S+ DRIAY M  DA  KG++ PGKS ++E T GNTGIGLA
Sbjct: 46  SIKDRIAYSMIKDAEDKGLITPGKSTLIEATGGNTGIGLA 85



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 506 VHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
           + +D+  +IGNTP+V L+K+   +G    + AK E + P
Sbjct: 7   IKNDVTELIGNTPMVYLNKIV--DGCVARIAAKLEMMEP 43


>At5g28030.1 68418.m03376 cysteine synthase, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative similar to O-acetylserine(thiol)
           lyase [Brassica juncea] GI:2245144; contains Pfam
           profile PF00291: Pyridoxal-phosphate dependent enzyme
          Length = 323

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 25/40 (62%), Positives = 30/40 (75%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           S+ DRIAY M  DA  KG++ PGKS ++E T GNTGIGLA
Sbjct: 46  SIKDRIAYSMIKDAEDKGLITPGKSTLIEATGGNTGIGLA 85



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 506 VHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNP 622
           + +D+  +IGNTP+V L+K+   +G    + AK E + P
Sbjct: 7   IKNDVTELIGNTPMVYLNKIV--DGCVARIAAKLEMMEP 43


>At3g04940.1 68416.m00536 cysteine synthase, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative similar to O-acetylserine(thiol)
           lyase (EC 4.2.99.8) [Brassica juncea] GI:2245144;
           contains Pfam profile PF00291: Pyridoxal-phosphate
           dependent enzyme
          Length = 324

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 26/40 (65%), Positives = 31/40 (77%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV +RIAY M  DA  KG++ PGKS ++E TSGNTGIGLA
Sbjct: 47  SVKERIAYGMIKDAEDKGLITPGKSTLIEATSGNTGIGLA 86


>At3g03630.1 68416.m00366 cysteine synthase, chloroplast, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative identical to SP|O22682 Probable
           cysteine synthase, chloroplast precursor {Arabidopsis
           thaliana}, similar to SP|P31300 Cysteine synthase,
           chloroplast precursor {Capsicum annuum}
          Length = 404

 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           SV DRI   M  +A   G + P K+V+VEPT+GNTG+G+A
Sbjct: 138 SVKDRIGLSMINEAENSGAITPRKTVLVEPTTGNTGLGIA 177



 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +2

Query: 455 TLKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGR 628
           T+ +  HI  +   N  +  D+  +IG+TP+V L+++   +G   ++ AK E + P R
Sbjct: 84  TVAEEQHIAESETVN--IAEDVTQLIGSTPMVYLNRV--TDGCLADIAAKLESMEPCR 137


>At3g61440.1 68416.m06881 cysteine synthase, putative /
           O-acetylserine (thiol)-lyase, putative / O-acetylserine
           sulfhydrylase, putative identical to cysteine synthase
           (EC 4.2.99.8) [Arabidopsis thaliana] GI:5824334;
           contains Pfam profile PF00291: Pyridoxal-phosphate
           dependent enzyme
          Length = 368

 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +3

Query: 630 SVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLA 749
           S+ DR A  M  DA +K ++ PGK+ ++EPTSGN GI LA
Sbjct: 88  SIKDRPAIAMIADAEKKKLIIPGKTTLIEPTSGNMGISLA 127


>At1g55880.2 68414.m06409 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 348

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = +2

Query: 506 VHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 625
           + + +++ IGNTPL++++ L +  G  CE+  KCEFLNPG
Sbjct: 40  MRNGLVDAIGNTPLIRINSLSEATG--CEILGKCEFLNPG 77



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 612 FSTLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLALGR----CCXXVQV 779
           F   GGSV DR+A ++  +A + G L PG  ++ E ++G+T I LA       C   V +
Sbjct: 73  FLNPGGSVKDRVAVKIIQEALESGKLFPG-GIVTEGSAGSTAISLATVAPAYGCKCHVVI 131

Query: 780 PLXCCLRKCQM 812
           P    + K Q+
Sbjct: 132 PDDAAIEKSQI 142


>At1g55880.1 68414.m06408 pyridoxal-5'-phosphate-dependent enzyme,
           beta family protein similar to SP|P50867 Cysteine
           synthase (EC 4.2.99.8) (O-acetylserine sulfhydrylase)
           (O-acetylserine (Thiol)-lyase) [Aspergillus nidulans]
           {Emericella nidulans}; contains Pfam profile PF00291:
           Pyridoxal-phosphate dependent enzyme
          Length = 421

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = +2

Query: 506 VHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPG 625
           + + +++ IGNTPL++++ L +  G  CE+  KCEFLNPG
Sbjct: 40  MRNGLVDAIGNTPLIRINSLSEATG--CEILGKCEFLNPG 77



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +3

Query: 612 FSTLGGSVXDRIAYRMFLDAXQKGILKPGKSVIVEPTSGNTGIGLALGR----CCXXVQV 779
           F   GGSV DR+A ++  +A + G L PG  ++ E ++G+T I LA       C   V +
Sbjct: 73  FLNPGGSVKDRVAVKIIQEALESGKLFPG-GIVTEGSAGSTAISLATVAPAYGCKCHVVI 131

Query: 780 PLXCCLRKCQM 812
           P    + K Q+
Sbjct: 132 PDDAAIEKSQI 142


>At5g35750.1 68418.m04281 histidine kinase (AHK2) identical to
           histidine kinase AHK2 [Arabidopsis thaliana]
           gi|13537196|dbj|BAB40774
          Length = 1176

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 509 VPSDFDPVPLQCEACPLV*RIFSQSSMCH 423
           VP +FDP P+Q E  P+   IF+Q ++ H
Sbjct: 365 VPENFDPAPIQDEYAPV---IFAQETVSH 390


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 17/59 (28%), Positives = 32/59 (54%)
 Frame = +2

Query: 458 LKDMPHIVRALDRNQKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGRIR 634
           LK++P+++RA+D ++++  DIL    +  L   + +  DE L+ E     E L   R +
Sbjct: 336 LKNLPYVLRAIDLHERIF-DILKNGNHHLLASYTLMDPDEDLEREYQEGLEELQNSRTK 393


>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
           contains Pfam profile: PF00628 PHD-finger
          Length = 1189

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 422 NGTSNSARKFFTLKDMPHIVRALDRNQKVHSDI 520
           N  S       T+ +  H+V  +D NQ++HSD+
Sbjct: 389 NLISGCPESVLTVSEGSHLVHDVDANQEIHSDL 421


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,285
Number of Sequences: 28952
Number of extensions: 341265
Number of successful extensions: 704
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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