Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P02
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.01 |cdc17||ATP-dependent DNA ligase Cdc17|Schizosacchar...    26   5.7  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   10.0 
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   10.0 

>SPAC20G8.01 |cdc17||ATP-dependent DNA ligase
           Cdc17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 768

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 545 QQKVGASLSAAHSDVINRNDYSARG*AEPVPISSSSLDFNAR 670
           Q+ +G+S S+  SD ++ N+ S      P+PI    L+ NAR
Sbjct: 100 QKTLGSSSSS--SDAVSSNNDSGASTPIPLPIKEPPLESNAR 139


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 339 PERAPAEAALSLWRSLKSADPMALSTFLSLPVRGTFRAAPEVPS 208
           P     E ++S   SL S+DP+  STF SL    T  + P V S
Sbjct: 150 PSSTSVEVSISS-SSLSSSDPLTSSTFSSLS-SSTSSSQPSVSS 191


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +3

Query: 498 NAPNFNTLGGGVDYMFNRRWAHR*AXRTLTSSTGMTTR-PGGKLNLFRSRPARS 656
           N+P   TL  GV+Y FN   A+     T  S+T +  + P G  N+ R R  RS
Sbjct: 796 NSPQCGTLHSGVEYKFNVS-AYACQPSTSISNTRLAIQTPTG--NIVRLREERS 846


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,076
Number of Sequences: 5004
Number of extensions: 47709
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)