Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P02
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.0  
SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)                       29   3.5  
SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)                    29   3.5  
SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)                   29   4.6  
SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)              29   4.6  
SB_54783| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_28847| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_45176| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/81 (24%), Positives = 34/81 (41%)
 Frame = +2

Query: 299 RHKLSAASAGARSGQCKRARAEPDRDPHSRLXXXXXXXXXXXFVPQQQPRPERQGVRDQE 478
           +HKL AA A  +    KR  A+ D +   R+              +   R  ++ ++D+ 
Sbjct: 61  QHKLKAA-ATVKQDNSKRCEADKDEELSKRICWLKQRCNEVDMRWEAAKRKAQRLIQDRA 119

Query: 479 LAQRHSQRAQLQHAGRRSGLH 541
           + Q   Q  + +HA    GLH
Sbjct: 120 VMQSEIQTIKEKHAEAEEGLH 140


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 434 QQQPRPERQGVRDQELAQRHSQRAQLQHAGRRSGLHVQQK 553
           QQQP+P++Q  + QE  Q+  Q+ Q Q   ++     QQ+
Sbjct: 39  QQQPQPQQQQQQQQEQEQQQQQQQQQQQQQQQQQQQQQQQ 78


>SB_36998| Best HMM Match : TUDOR (HMM E-Value=0)
          Length = 2538

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 505 GALGMALGEFLIANALALRSWLLLWNKLTLPATPSCSPKPGMRVPVRLSP 356
           G + M + + LIA   A+++     N L +PA  S  PKP   V V+ SP
Sbjct: 395 GDMDMQISQILIAAGYAVKTSEFNPNPLRIPAAKSTPPKPA-PVQVQASP 443


>SB_6115| Best HMM Match : efhand (HMM E-Value=0.22)
          Length = 822

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = +2

Query: 158 HVPTRARRQAGSFTVNS---DGTSGAALKVPLTGNDKNVLSAIGSADFNDRHK 307
           HVP +     G +  NS     T G+ + +PL  ++K V+  +G    ND HK
Sbjct: 526 HVP-KVGSHGGVYFWNSFRNKDTDGSLIVLPLKDHEKRVIGLLGVDTLNDSHK 577


>SB_57079| Best HMM Match : DUF1140 (HMM E-Value=3.8)
          Length = 235

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 434 QQQPRPERQGVRDQELAQRHSQRAQL--QHAGRRSGLHVQQKVG 559
           QQQ +P++Q  + Q+L Q+  Q+ QL  Q   ++  L +QQ +G
Sbjct: 184 QQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQMLMMQQFIG 227


>SB_30201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 434 QQQPRPERQGVRDQELAQRHSQRAQLQHAGRRSGLHVQQKV 556
           QQQ +P++Q  + Q+L Q+  Q+ QLQ    +     QQ++
Sbjct: 76  QQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQQQQQQL 116



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 434 QQQPRPERQGVRDQELAQRHSQRAQL--QHAGRRSGLHVQQKVG 559
           QQQ +P++Q  + Q+L Q+  Q+ QL  Q   ++  L +QQ +G
Sbjct: 126 QQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQMLMMQQFIG 169


>SB_18707| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 434 QQQPRPERQGVRDQELAQRHSQRAQLQHAGRRSGLHVQQKV 556
           QQQ +P++Q  + Q+L Q+  Q+ QLQ    +     QQ++
Sbjct: 75  QQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQQQQQQL 115



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 434 QQQPRPERQGVRDQELAQRHSQRAQL--QHAGRRSGLHVQQKVG 559
           QQQ +P++Q  + Q+L Q+  Q+ QL  Q   ++  L +QQ +G
Sbjct: 125 QQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQMLMMQQFIG 168


>SB_7444| Best HMM Match : Transposase_1 (HMM E-Value=9.4)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = +2

Query: 434 QQQPRPERQGVRDQELAQRHSQRAQL--QHAGRRSGLHVQQKVG 559
           QQQ +P++Q  + Q+L Q+  Q+ QL  Q   ++  L +QQ +G
Sbjct: 116 QQQQQPQQQQPQQQQLQQQQLQQQQLQQQQLQQQQMLMMQQFIG 159


>SB_54783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -3

Query: 429 TN*PCLRRRAAPRSRECGSRSGSARARLHCPERAPAEAALSLWRSL-KSADPMALSTFLS 253
           +N PCL   +AP +      + SA  R + P  A A A L+   +L +S DP   +   +
Sbjct: 135 SNDPCLATASAPLA------TPSALTRSNDPYLATASAPLATPFALTRSNDPCLATASAT 188

Query: 252 LPVRGTFRAAPEVPSEFT 199
            P R T  A+   PS+ T
Sbjct: 189 APNRHTMLASDIAPSQIT 206


>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 434  QQQPRPERQGVRDQELAQRHSQRAQLQHAGRRSGLHVQQK 553
            QQQ   ++Q  R  +  Q H Q+ Q QH  ++   H QQK
Sbjct: 1106 QQQQHDQQQQQRHDQQQQHHDQQQQ-QHHDQQQQHHEQQK 1144


>SB_28847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = +3

Query: 603 TTRPGGKLNL---FRSRPARSTSTPGFKKF 683
           TT  GG L +   F   PA ST +P FK+F
Sbjct: 90  TTNSGGSLKILDPFSRSPALSTKSPAFKRF 119


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,999,185
Number of Sequences: 59808
Number of extensions: 390764
Number of successful extensions: 1164
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)