Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P01
         (868 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.53 
SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      30   2.1  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   4.9  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   4.9  
SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)           28   8.6  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   8.6  
SB_19185| Best HMM Match : DUF1269 (HMM E-Value=0.28)                  28   8.6  

>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 32.3 bits (70), Expect = 0.53
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 265 YIGSNLVHFGELLTDLGLADSWFSWM*NIANHLLARQQSVGHEFASANS 119
           +I  N  +F   + DLG+A ++   +  + +H L R Q+VGH FA   S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336


>SB_34297| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 512

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/70 (30%), Positives = 34/70 (48%)
 Frame = -1

Query: 418 FARGPLLLVQAVAG*PVLGLELLGQIECVVDQSESS*FATSEVCLETEYEHYIGSNLVHF 239
           F +G   L + V    ++GLEL  +I+ ++D++ S        CL +E   +   N   F
Sbjct: 56  FFQGDSTLKEPVQKILIIGLELAKEIQKLIDEASSGLNIKHAACLPSEVPAF--CNTERF 113

Query: 238 GELLTDLGLA 209
           G LL D+  A
Sbjct: 114 GLLLVDVRCA 123


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 365 KHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTXKSKV 478
           +H LA H   +++RP+   R+  K R++K+R    S+V
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIREEFGSEV 415


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +2

Query: 365 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 457
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +2

Query: 338  LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 454
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_32823| Best HMM Match : Late_protein_L1 (HMM E-Value=2.5)
          Length = 585

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 23/76 (30%), Positives = 38/76 (50%)
 Frame = +1

Query: 193 RKTNCQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQ 372
           R+T+   DR    A+ NV   S   V++R  D ++   ++ ++ D R + SGQ+V   ++
Sbjct: 281 RRTSQSNDR----AQGNVTVVSTAHVQVRADD-VQAMNVSGVKSDGRPSSSGQDVYDGSR 335

Query: 373 VSPPRPVREEEAHAQT 420
            S   P    E  AQT
Sbjct: 336 QSTHGPALPWEELAQT 351


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/27 (44%), Positives = 20/27 (74%)
 Frame = -1

Query: 241 FGELLTDLGLADSWFSWM*NIANHLLA 161
           FGEL+ D G + + F+W+ N++N +LA
Sbjct: 76  FGELMLDAGWSRNAFNWL-NMSNSMLA 101


>SB_19185| Best HMM Match : DUF1269 (HMM E-Value=0.28)
          Length = 407

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 365 KHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTXKSKV 478
           +HRLA      +K P+ + R++ K R++++R    SKV
Sbjct: 368 RHRLAPSDKKSRKGPSPEAREKIKKRLREIREEFGSKV 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,356,452
Number of Sequences: 59808
Number of extensions: 439488
Number of successful extensions: 1247
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1232
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2479240863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)