Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_P01
         (868 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   182   3e-46
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   4e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    40   0.002
Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical...    28   7.5  
AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein sig...    28   7.5  
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    28   7.5  
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    28   9.9  
Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical pr...    28   9.9  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   9.9  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  182 bits (443), Expect = 3e-46
 Identities = 85/123 (69%), Positives = 101/123 (82%), Gaps = 1/123 (0%)
 Frame = +2

Query: 119 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 298
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 299 GGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGTXKSK 475
           GGKS GFAL+YDT+D AKKFEPK+RL R GL  K ++P RKQRKERKNR KKVRGT K+K
Sbjct: 66  GGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVRGTAKAK 125

Query: 476 VGA 484
           V A
Sbjct: 126 VSA 128


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +2

Query: 170 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 268
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +2

Query: 314 GFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 442
           GF L+YDT D A K++P+H  + H      R +  +RKE++ R
Sbjct: 54  GFTLVYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95


>Z81036-2|CAD30433.1|  431|Caenorhabditis elegans Hypothetical
           protein C16C2.2b protein.
          Length = 431

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 235 RQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQVSPPRP 390
           RQN QGY     R+RF  K + W       D   T   Q       + PP+P
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 252


>Z81036-1|CAB02742.1|  473|Caenorhabditis elegans Hypothetical
           protein C16C2.2a protein.
          Length = 473

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 235 RQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQVSPPRP 390
           RQN QGY     R+RF  K + W       D   T   Q       + PP+P
Sbjct: 201 RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 252


>AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical
           protein Y105E8A.28 protein.
          Length = 210

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 334 HTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGP 456
           H R+ +  R +  V PP+   E E  A  A    EQN  GP
Sbjct: 26  HLRNEELHRFRQAVPPPQQAEEAEEEADVAENVVEQNRLGP 66


>AF291851-1|AAK55968.1|  103|Caenorhabditis elegans G protein
           signaling regulator EAT-16 protein.
          Length = 103

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +1

Query: 235 RQNVQGYSRCSVRIRFQDKLRRWQINWIRFDLRHTRSGQEVRAQAQVSPPRP 390
           RQN QGY     R+RF  K + W       D   T   Q       + PP+P
Sbjct: 1   RQNAQGYRCLMDRLRFAIKTKPWLKALKASDTMVTWVDQRAEFDPFLHPPQP 52


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 326 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 451
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 17  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 326 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 451
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 64  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = -1

Query: 295 EVCLE--TEYEHYIGSNLVHFGELLTDLGLADSWFSWM*NIANHLLARQQSVGHEFASAN 122
           E+C +  T+  H    +LVH GE      + D  FS   N+  HL  R  +    +    
Sbjct: 539 EICTKEFTQLAHLQKHHLVHTGERPHRCDICDKRFSSTSNLKTHL--RLHNGQKPYTCDV 596

Query: 121 SRCSFTHFELFSIIRRLHA 65
               FT +    + +RLHA
Sbjct: 597 CDAKFTQYVHLRLHKRLHA 615


>Z68879-4|CAA93085.1|  215|Caenorhabditis elegans Hypothetical
           protein K08F4.5 protein.
          Length = 215

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = +2

Query: 350 KKFEPKHRLARHGLYEKKRPTRKQ--RKERKNRMKKVRGTXKSKVG 481
           KK EPK ++      EKK  T+K+  ++E+K   +K     +SK G
Sbjct: 68  KKEEPKEKVPEKKEEEKKDATKKEEAKEEKKEEERKEEKKEESKEG 113


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 231 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 91
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,027,998
Number of Sequences: 27780
Number of extensions: 330072
Number of successful extensions: 1025
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)