Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O24
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces po...    28   1.6  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   6.4  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   8.5  

>SPAC139.04c |fap2||L-saccharopine oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/72 (25%), Positives = 33/72 (45%)
 Frame = +2

Query: 221 TTLSLGTGKWGEGRSSGLWERATKDFLVKVVTTGSSSMMTAAN*PDRLTAPEY*DLEATV 400
           T + +G G +G   +  L +  + D ++ +      S M+AAN  +++  PEY DL+   
Sbjct: 4   TIVIVGCGVFGLSTAVELAKNHSFDNIIAIDAEPVPSSMSAANDINKIVRPEYADLKYMK 63

Query: 401 PVTGGRLDWANE 436
                   W N+
Sbjct: 64  LALEAMEKWRND 75


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 24/85 (28%), Positives = 39/85 (45%)
 Frame = -3

Query: 423 SRRPPVTGTVASRS*YSGAVSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDLPSPHF 244
           S  PPV+ T AS   YS ++ +S      +   LP+      +   +LS  P  +PS   
Sbjct: 233 SDNPPVS-TAASA--YSSSLPISD-----VTRALPLAPASNSQH-PSLSSQPVSVPSNTI 283

Query: 243 PVPSDKVVNIARVSD*P*KLAGDRI 169
            +P+D +  ++  S  P K   +RI
Sbjct: 284 NIPTDSLSIVSNPSQTPAKFDSNRI 308


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +3

Query: 105 SRCTPCMRERSSFYASWLRREVSDHQPIFKVSPTPSRYSRLC 230
           S  T  M +   F + W     SD    F +SP    ++RLC
Sbjct: 132 SSLTGLMSQLHFFISKWKFPNFSDLSKGFYISPNERNFTRLC 173


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,068,978
Number of Sequences: 5004
Number of extensions: 56950
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)