Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O24
         (905 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0636 + 20168180-20168462,20168961-20170303,20170401-201706...    31   1.7  
08_02_0725 - 20442988-20443180,20443268-20443540,20443642-204438...    30   2.2  
04_01_0215 - 2728413-2728599,2729794-2730318,2730548-2730755,273...    29   3.8  
09_04_0734 + 19796297-19796329,19796866-19797129                       29   6.7  
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57...    29   6.7  
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917     29   6.7  
02_05_0047 + 25411500-25412867                                         29   6.7  

>07_03_0636 +
           20168180-20168462,20168961-20170303,20170401-20170678,
           20170790-20170821,20170908-20171314,20171401-20171847
          Length = 929

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 138 SFYASWLRREVSDHQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 272
           SF  S+L +E++  +       +PS Y+R   LG GNGG + + D
Sbjct: 708 SFARSYLVQELNIAETRLVPLNSPSDYARALELGSGNGGVDAIID 752


>08_02_0725 -
           20442988-20443180,20443268-20443540,20443642-20443853,
           20443935-20444247,20444334-20444441,20444537-20444643,
           20444743-20444781
          Length = 414

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 312 TTFTKKSLVALSQSPEDLPSPHFPVPSDKVV 220
           TTF +++  A S +PE+LP P   +  D+VV
Sbjct: 233 TTFRRRTTAAASPAPEELPLPRKILDHDRVV 263


>04_01_0215 -
           2728413-2728599,2729794-2730318,2730548-2730755,
           2730946-2731001,2731294-2731394,2731923-2732150
          Length = 434

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 530 VFXPRSHTPEADASIPALPPIACSSQ 453
           +  P SH P A ++ P LP +A SSQ
Sbjct: 241 IVIPTSHAPSAKSASPPLPALAMSSQ 266


>09_04_0734 + 19796297-19796329,19796866-19797129
          Length = 98

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +1

Query: 238 DREMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGP-GGDST 402
           + E GGG  FG  GE   G  G G     +       LTG   G  V G   GD+T
Sbjct: 35  EEECGGGVSFGAAGEDGHGGDGDGDGVNAYLRFPGPTLTGSGDGGVVGGEVDGDAT 90


>07_01_0077 +
           566895-567127,567207-567331,571204-571340,571437-571542,
           571635-571885,572018-572128,572209-572320,572626-572716,
           573168-573507,573678-573900,573946-574204,574274-574481,
           574572-574622,574712-574870,574956-575120,575322-575399,
           575732-576031,576107-576259,576871-576918,577019-577188,
           577738-577852,578462-578623,578789-578893,578969-579199,
           579277-579410,579484-579738,579822-580110,580214-580306,
           580395-580520,580646-580897
          Length = 1693

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +3

Query: 150 SWLRREVSDHQP-IFKVSPTPSRYSRLCHLGQGNGGREGLRDFGRERP 290
           SWL REV  H P  F + P P   S+    GQ N  +E  + F    P
Sbjct: 94  SWLWREVLKHNPDAFTIKPRPLPPSQDPLEGQENQNQEHEKHFAHVAP 141


>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
          Length = 447

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 105 SRCTP-CMRERSSFYASWLRREVSDHQPIFKVSPTPS 212
           + CTP     RSS YA+ L R  S  +   KVSPTPS
Sbjct: 234 AHCTPRTSSRRSSCYATPLCRTPSKVELYQKVSPTPS 270


>02_05_0047 + 25411500-25412867
          Length = 455

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 34/119 (28%), Positives = 52/119 (43%)
 Frame = -3

Query: 570 TELXRDHSAS*QVSIXTKIPHAGS*CXDPSAATNCXFKSIAAWAFSLAQSRRPPVTGTVA 391
           T L R+H     VS+   I  A       SA++     S+AA    L++SRR       A
Sbjct: 42  TRLRREHDPDRVVSLFEAIDDASL-----SASSTRHALSLAARR--LSRSRR--FADAEA 92

Query: 390 SRS*YSGAVSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDLPSPHFPVPSDKVVNI 214
             S +  A     Q AAV+        +  +K+L A   +   LPSP  P+P + V+++
Sbjct: 93  LLSSHIPASPTEPQLAAVLCSY--AAASLPEKALAAFRSAAPSLPSPISPLPFNAVLSV 149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,901,116
Number of Sequences: 37544
Number of extensions: 461855
Number of successful extensions: 1199
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)