Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O24
         (905 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)           31   1.3  
SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   3.0  
SB_58175| Best HMM Match : Arm (HMM E-Value=0)                         29   5.2  
SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.8  
SB_56392| Best HMM Match : FARP (HMM E-Value=3.8e-27)                  29   6.8  
SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)         29   6.8  
SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)                28   9.0  
SB_10110| Best HMM Match : GASA (HMM E-Value=9.9)                      28   9.0  
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              28   9.0  

>SB_16796| Best HMM Match : Multi_Drug_Res (HMM E-Value=0.96)
          Length = 725

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +2

Query: 158 TQRSIRSPANFQGQSDTLAIFTTLSLGTGKWGEGRSSGLWERATKDFLVKVV 313
           T+ +  +PA   G   ++   TTL+L      + RSSG +  A+  FL K+V
Sbjct: 434 TRSATYAPAIMSGCGTSIMFVTTLALAAELVDQDRSSGAFVMASMSFLSKIV 485


>SB_298| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +1

Query: 241 REMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAY 366
           R  GGG   G +    +GLFG G Y+ E     RG   G AY
Sbjct: 82  RLFGGGAYSGEVLIRGRGLFGVGAYSGEGLIRGRGLFGGGAY 123


>SB_58175| Best HMM Match : Arm (HMM E-Value=0)
          Length = 1472

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 145  MPPGYAEKYPITSQFSRSVRHPRDIHD 225
            +PPG   + P T+Q   SVRH R + D
Sbjct: 1368 LPPGERRRRPHTTQSLPSVRHARSVRD 1394


>SB_21309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 70  CHNSKCIPRCCYPAALLVCVNAQVSMPPGY 159
           C  ++C+P C       VCVN Q   P GY
Sbjct: 467 CKQAECVPECLNGG---VCVNRQCQCPQGY 493


>SB_9671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 49  SCLEQRNCHNSKCIPRCCYPAALLVCVNAQVSMPPG 156
           SC+ + +CH   C  R C+     +C +  ++ PPG
Sbjct: 103 SCVWESHCHALTCTARICHQ----ICSDCSMTCPPG 134


>SB_56392| Best HMM Match : FARP (HMM E-Value=3.8e-27)
          Length = 412

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 205 HPRDIHDFVTWDREMGGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYG 369
           H +  H+   W R  G G+     G  DQG FG+    R F  +D+G+   +  G
Sbjct: 127 HHKHHHEEGEWKRTAGPGR----FGREDQGRFGREDQGR-FGREDQGRFGREDQG 176


>SB_42958| Best HMM Match : Mito_carr (HMM E-Value=4.60046e-42)
          Length = 247

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 25/81 (30%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
 Frame = +2

Query: 86  VFQGVVIPLHSLYA*TLKFLCLLVTQRSIRSPANFQGQSD-TLAIFTT-------LSLGT 241
           VF GV +    +YA T +  CLL  Q+   + A +QG  D  L ++ T         LG 
Sbjct: 168 VFCGVCVSF--IYAPTERVKCLLQVQKESGTKARYQGLGDCLLQVYRTGGLRGVFKGLGP 225

Query: 242 GKWGEGRSSGLWERATKDFLV 304
               E    G W    +DF V
Sbjct: 226 TMGREVIGGGFWTLPMRDFYV 246


>SB_36926| Best HMM Match : Flocculin (HMM E-Value=0.93)
          Length = 206

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 262 VFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPG 390
           VFG+ G+    LF        F N+ +  L G  +GT  LG G
Sbjct: 85  VFGSTGQPGGSLFVASSPGSGFGNNSQPGLFGTGFGTSQLGQG 127


>SB_10110| Best HMM Match : GASA (HMM E-Value=9.9)
          Length = 121

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 20/51 (39%), Positives = 26/51 (50%)
 Frame = +1

Query: 79  SKCIPRCCYPAALLVCVNAQVSMPPGYAEKYPITSQFSRSVRHPRDIHDFV 231
           SK +PRCCY A  L+ V   VS+       +P+ +Q S SV     I  FV
Sbjct: 4   SKRVPRCCYLAVTLLVV-ILVSV----VISFPVKTQHSASVALAEGILAFV 49


>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 130 NAQVSMPPGYAEKYPITSQFSRSVRHPRDI 219
           NA +S PP Y  +  + ++F  +  HPR I
Sbjct: 264 NAFISYPPAYFTQRTLLARFQMNTSHPRKI 293


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,934,826
Number of Sequences: 59808
Number of extensions: 474886
Number of successful extensions: 1115
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)