Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O24
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical...    36   0.053
AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical ...    30   2.0  
AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain p...    30   2.0  
AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical ...    29   6.0  
AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical ...    28   8.0  

>AC024859-14|AAY43989.1|  643|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.19 protein.
          Length = 643

 Score = 35.5 bits (78), Expect = 0.053
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 250 GGGKVFGTLGESDQGLFGKGGY-NREFFNDDRGKLTGQAYGTRVLGPGGDSTSYRWSS 420
           GGG      G+     F +GGY NR+  +D+RG  +G++Y       GGD  + RW++
Sbjct: 55  GGGYNRQDRGDGGSSNFSRGGYNNRDEGSDNRG--SGRSYNNDRRDNGGDGQNTRWNN 110


>AL132858-4|CAB60479.2|  338|Caenorhabditis elegans Hypothetical
           protein Y113G7A.6b protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -3

Query: 414 PPVTGTVASRS*YSGAVSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDLPSPHFPVP 235
           P +TGT AS+S  SG+ S SG F    I  +   TT    ++ A        P+ H   P
Sbjct: 47  PSLTGTGASQS--SGSAS-SGNFPMSYIPNVSSATTVAAANMSAYFNQKSAYPTSHLGFP 103

Query: 234 SD 229
           S+
Sbjct: 104 SN 105


>AF381627-1|AAL12000.1|  332|Caenorhabditis elegans homeodomain
           protein TTX-1 protein.
          Length = 332

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = -3

Query: 414 PPVTGTVASRS*YSGAVSLSGQFAAVIIEELPVVTTFTKKSLVALSQSPEDLPSPHFPVP 235
           P +TGT AS+S  SG+ S SG F    I  +   TT    ++ A        P+ H   P
Sbjct: 41  PSLTGTGASQS--SGSAS-SGNFPMSYIPNVSSATTVAAANMSAYFNQKSAYPTSHLGFP 97

Query: 234 SD 229
           S+
Sbjct: 98  SN 99


>AC006809-3|AAY86286.1|  558|Caenorhabditis elegans Hypothetical
           protein Y5H2A.4 protein.
          Length = 558

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 49  SCLEQRNCHNSKCIPRCCYPAA 114
           SC + + CH  +CIP+C  PAA
Sbjct: 435 SCQQTQQCHQ-QCIPQCQQPAA 455


>AF000193-3|AAB52890.1|  259|Caenorhabditis elegans Hypothetical
           protein T20B6.3 protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = +1

Query: 250 GGGKVFGTLGESDQGLFGKGGYNREFFNDDRGKLTGQAYGTRVLGPGG 393
           GGG   G  G    G +G GG+         G + G  YG   +G GG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,426,821
Number of Sequences: 27780
Number of extensions: 345283
Number of successful extensions: 765
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)