Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O24
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              25   0.95 
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   8.8  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   8.8  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -2

Query: 142 KLERSRIQGVQRDNNTLEYILNCDSFAARDKNVKILRI 29
           K  R  +Q V  DN T + I+ C   +  + ++KI +I
Sbjct: 82  KNTRDIVQAVLDDNETDQLIVECSPISDANVHIKISKI 119


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 337 DRGKLTGQAYGTRVLGPGGDSTSY 408
           D+  +TG AYG   + PG  S  +
Sbjct: 66  DKNGMTGDAYGGLNIRPGQPSRQH 89


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 192 KVSPTPSRYSRLCHLGQGNGGREGLRDFGRERPRTF 299
           + S   SRY  L H  + +   +G R   R+R R +
Sbjct: 226 RTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREY 261


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,782
Number of Sequences: 438
Number of extensions: 4808
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)