Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O24
         (905 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g32350.1 68417.m04605 expressed protein contains Pfam profile...    32   0.45 
At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein ...    28   7.4  
At4g14905.2 68417.m02290 kelch repeat-containing F-box family pr...    28   9.8  
At4g14905.1 68417.m02289 kelch repeat-containing F-box family pr...    28   9.8  
At1g73410.1 68414.m08499 myb family transcription factor (MYB54)...    28   9.8  

>At4g32350.1 68417.m04605 expressed protein contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 732

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 129 ERSSFYASWLRREVSD-HQPIFKVSPTPSRYSRLCHLGQGNGGREGLRD 272
           ER  FY    +    + HQPIF    T        +LGQGNG R G+ D
Sbjct: 279 ERKEFYLHSKQNPAREKHQPIFNEGDTIVMKVNYGNLGQGNGHRPGVVD 327


>At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 262

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 241 REMGGGKVFGTLGESDQGLFGKGGY 315
           REMGGG        +DQG FG  GY
Sbjct: 23  REMGGGDSLEAGTSTDQGAFGSLGY 47


>At4g14905.2 68417.m02290 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 88  IPRCCYPAALLVCVNAQ--VSMPPGYAEK 168
           +PRC YPA  LVC N +  ++ P  Y E+
Sbjct: 46  VPRCYYPAISLVCRNFRRLMASPEIYIER 74


>At4g14905.1 68417.m02289 kelch repeat-containing F-box family
           protein contains Pfam PF01344: Kelch motif (2 copies)
           and PF00646: F-box domain; similar to putative SKP1
           interacting partner 6 (GP:21689879) (SKIP6) {Arabidopsis
           thaliana}|19798784|gb|AU230074.1|AU230074
          Length = 372

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +1

Query: 88  IPRCCYPAALLVCVNAQ--VSMPPGYAEK 168
           +PRC YPA  LVC N +  ++ P  Y E+
Sbjct: 46  VPRCYYPAISLVCRNFRRLMASPEIYIER 74


>At1g73410.1 68414.m08499 myb family transcription factor (MYB54)
           identical to putative transcription factor (MYB54)
           GI:3941471 from [Arabidopsis thaliana]
          Length = 243

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 271 TLGESDQGLFGKGGYNREFFNDDRGKL 351
           +L  S+Q +   GGYN  + +DDR K+
Sbjct: 124 SLMASEQIMMSSGGYNHNYSSDDRKKI 150


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,834,163
Number of Sequences: 28952
Number of extensions: 343228
Number of successful extensions: 831
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2139598560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)