Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O23
(914 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0904 + 20717005-20718087 31 0.97
03_01_0515 - 3864796-3865425 29 3.9
12_02_1174 - 26696869-26698191 29 5.2
06_03_0258 - 18847954-18848670 29 5.2
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.8
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 28 9.0
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 9.0
07_01_0662 + 4972953-4973645,4973758-4974046,4974790-4974803,497... 28 9.0
02_05_0686 - 30900748-30902167,30903442-30904742 28 9.0
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 9.0
>04_03_0904 + 20717005-20718087
Length = 360
Score = 31.5 bits (68), Expect = 0.97
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +1
Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
P P PTP+ ++ TP P PP PP PPP
Sbjct: 317 PQPKPTPSP--YTPKPTPTPPTYTPTPTPPYHKPPPSYTPGPPP 358
>03_01_0515 - 3864796-3865425
Length = 209
Score = 29.5 bits (63), Expect = 3.9
Identities = 13/40 (32%), Positives = 14/40 (35%)
Frame = +1
Query: 790 PTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
P PA G + P PP P PP PPP
Sbjct: 62 PPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPP 101
>12_02_1174 - 26696869-26698191
Length = 440
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPP 885
P+P P P + +S P P PP P PP
Sbjct: 270 PSPLPPPPEDYWSPTAVTPPEPTKPKPPPPSPPPPP 305
>06_03_0258 - 18847954-18848670
Length = 238
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 118 FTSSNFNTAKAKLNRASAHVGDAILQILRIP 26
FT S+ + A L AHVGDA+++ RIP
Sbjct: 123 FTYSSDSGGHADLTYRGAHVGDAVVEAGRIP 153
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 28.7 bits (61), Expect = 6.8
Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Frame = +1
Query: 775 HPA-PXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
HPA P P P SA P P P PP PPP
Sbjct: 327 HPAAPAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPP 372
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 432 PPPPPPPPPPPPLPPNMPPP 451
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 106 PPPPPPPPPSPPPSAPPPPP 125
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 107 PPPPPPPPSPPPSAPPPPPP 126
>07_01_0662 +
4972953-4973645,4973758-4974046,4974790-4974803,
4974848-4974856
Length = 334
Score = 28.3 bits (60), Expect = 9.0
Identities = 16/48 (33%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Frame = +1
Query: 778 PAPXPTPAQGDFSAXXXXXXXXXT----PXPXPPXPXXPPXXXXXPPP 909
P+P PTPA S + P P PP PP PPP
Sbjct: 175 PSPVPTPALAPASPPRHRPASPPSYLARPPPPPPGYIEPPQGYIEPPP 222
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 784 PXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
P P P + +A P P PP PP PPP
Sbjct: 314 PPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPP 355
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 356 PPPPPPPPPPPPPPPPRPPP 375
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 357 PPPPPPPPPPPPPPPRPPPP 376
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 358 PPPPPPPPPPPPPPRPPPPP 377
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 359 PPPPPPPPPPPPPRPPPPPP 378
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 360 PPPPPPPPPPPPRPPPPPPP 379
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,747,147
Number of Sequences: 37544
Number of extensions: 430186
Number of successful extensions: 2727
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2124
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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