Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP03_F_O23
(914 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48) 40 0.004
SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33) 30 2.3
SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14) 29 5.2
SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08) 29 6.9
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.9
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.2
>SB_34481| Best HMM Match : Extensin_2 (HMM E-Value=0.48)
Length = 341
Score = 39.5 bits (88), Expect = 0.004
Identities = 17/44 (38%), Positives = 17/44 (38%)
Frame = +1
Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
P P P PA G A P P PP P PP PPP
Sbjct: 290 PVPPPPPADGSAPAPPPPPPPGGAPPPPPPPPPPPPGDGGAPPP 333
>SB_12366| Best HMM Match : SRCR (HMM E-Value=4.4e-33)
Length = 457
Score = 30.3 bits (65), Expect = 2.3
Identities = 14/45 (31%), Positives = 15/45 (33%)
Frame = +1
Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPPS 912
P P P P P P PP P PP PPP+
Sbjct: 389 PPPPPQPPPPPPPPPPPPPPPPPPPPPPPPAPPPPPPPPPPPPPA 433
Score = 29.9 bits (64), Expect = 3.0
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPPS 912
P P PP P PP PPPS
Sbjct: 368 PPPPPPPPPSPPPPPPPPPPS 388
Score = 29.5 bits (63), Expect = 4.0
Identities = 14/44 (31%), Positives = 15/44 (34%)
Frame = +1
Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
P P P P S +P P P P PP PPP
Sbjct: 365 PPPPPPPPPPPPSPPPPPPPPPPSPPPPPQPPPPPPPPPPPPPP 408
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/45 (33%), Positives = 17/45 (37%)
Frame = +1
Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPPS 912
P+P P P S P P PP P PP PPP+
Sbjct: 376 PSPPPPPPPPPPSPPPPPQPPPPPPPP-PPPPPPPPPPPPPPPPA 419
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 847 TPXPXPPXPXXPPXXXXXPPP 909
+P P PP P PP PPP
Sbjct: 364 SPPPPPPPPPPPPSPPPPPPP 384
>SB_12397| Best HMM Match : Extensin_2 (HMM E-Value=0.14)
Length = 659
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 129 HINISRHQILTPPRRNSIGHRHMWGTP 49
H+N Q+L PP R S HR + TP
Sbjct: 473 HLNPKHRQLLAPPPRLSPKHRQLLATP 499
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 129 HINISRHQILTPPRRNSIGHRHMWGTP 49
H+N Q+L PP R S HR + TP
Sbjct: 625 HLNPKHRQLLAPPPRLSPKHRQLLATP 651
>SB_47784| Best HMM Match : Ank (HMM E-Value=1.4e-08)
Length = 593
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPPS 912
P P PP P PP PPP+
Sbjct: 475 PPPPPPPPPPPPPFPPPPPPT 495
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 464 PPPPPPPPPPPPPPPPPPPP 483
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 465 PPPPPPPPPPPPPPPPPPPP 484
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 466 PPPPPPPPPPPPPPPPPPPP 485
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 467 PPPPPPPPPPPPPPPPPPPP 486
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 468 PPPPPPPPPPPPPPPPPPPP 487
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 472 PPPPPPPPPPPPPPPPFPPP 491
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 473 PPPPPPPPPPPPPPPFPPPP 492
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 474 PPPPPPPPPPPPPPFPPPPP 493
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 28.7 bits (61), Expect = 6.9
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 4/56 (7%)
Frame = -2
Query: 514 PKXIW----WNXGRSRXFLRXIICGIXSXXVXACGFGLLLGXWSMCALALVGGRVC 359
P+ +W W R L ++CG+ + CG GL +C L L G +C
Sbjct: 1657 PRSLWPRSLWPRSLWRWSLCLVLCGLGLCCLGLCGLGLC--GLGLCGLGLCGLGLC 1710
>SB_21376| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 28.7 bits (61), Expect = 6.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPPS 912
P P PP P PP PPP+
Sbjct: 93 PYPPPPYPPYPPPPPYPPPPN 113
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 689 PPPPPPPPPPPPPQPSTPPP 708
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 690 PPPPPPPPPPPPQPSTPPPP 709
>SB_2559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1324
Score = 28.3 bits (60), Expect = 9.2
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +1
Query: 850 PXPXPPXPXXPPXXXXXPPP 909
P P PP P PP PPP
Sbjct: 1157 PPPPPPPPPPPPSSPSPPPP 1176
>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 613
Score = 28.3 bits (60), Expect = 9.2
Identities = 13/42 (30%), Positives = 15/42 (35%)
Frame = +1
Query: 784 PXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
P PTP+Q +P P PP P PPP
Sbjct: 561 PAPTPSQTQVKYMGSTSPVATSPPPHPPPPAHHVNKPGVPPP 602
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,359,953
Number of Sequences: 59808
Number of extensions: 386608
Number of successful extensions: 1716
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2645618622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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