Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O23
         (914 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    36   0.040
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    30   2.7  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu...    29   6.1  
AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 35.9 bits (79), Expect = 0.040
 Identities = 17/44 (38%), Positives = 17/44 (38%)
 Frame = +1

Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXPPXXXXXPPP 909
           PAP P PA     A          P P PP P  PP     PPP
Sbjct: 108 PAPAPPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPP 151


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 850 PXPXPPXPXXPPXXXXXPPPS 912
           P P PP P  PP     PPPS
Sbjct: 5   PPPPPPPPPPPPPAASAPPPS 25


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 850 PXPXPPXPXXPPXXXXXPPPS 912
           P P PP P  PP     PPPS
Sbjct: 5   PPPPPPPPPPPPPAASAPPPS 25


>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
           (myotubularin) family protein 5 protein.
          Length = 1744

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 299 IYFYIYSLYLQAXVVLFRRYPQNYEQ*ITGQVFETAQGFKGFTVNSTDQQTHELLHAI 126
           IY++   LY     +L+ R   N+E+ +T  +      F+GF    TD  +  LL ++
Sbjct: 340 IYYFAELLYGYQYYILYTRIKGNFEKKLTTSLTFHVGAFRGFR-KLTDMMSSSLLKSV 396


>AF025467-5|AAB71038.2| 1115|Caenorhabditis elegans Hypothetical
           protein R148.3a protein.
          Length = 1115

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 15/47 (31%), Positives = 17/47 (36%), Gaps = 2/47 (4%)
 Frame = +1

Query: 778 PAPXPTPAQGDFSAXXXXXXXXXTPXPXPPXPXXP--PXXXXXPPPS 912
           PAP P PA  +            TP P  P P  P  P     P P+
Sbjct: 351 PAPTPAPAPAEDPVVTPAPEELTTPPPPAPPPPAPAVPEEAQAPTPA 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,676,235
Number of Sequences: 27780
Number of extensions: 307182
Number of successful extensions: 1246
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2339274014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)