Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O23
         (914 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    26   0.42 
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    23   3.9  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    23   3.9  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    23   3.9  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    23   3.9  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    23   3.9  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    23   3.9  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    23   3.9  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    23   3.9  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    23   3.9  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    23   3.9  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    23   5.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   8.9  

>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 0.42
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++    P++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNPLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 60  RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 114


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 293 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 347


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 238 RKITNNESLVKFLRQR-KDLKVLQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           R+ +   S  +  R+R K+ K++     ++ + NY   Y ++   N+N     +N
Sbjct: 293 RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNNNYNNYNKHNYNKLYYNIN 347


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -2

Query: 175 LQ*TLPINRHMNYCTPYQHFTSSNFNTAKAKLN 77
           +Q  +P  RH+   TP+  F S N    +  LN
Sbjct: 142 IQEQIPRFRHIGPSTPFPRFISPNAYRFRPPLN 174


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 141 FMCLLIGRVYCKTFKSLRCLKNLT 212
           F C+ I   YCKT  S R  + LT
Sbjct: 288 FFCVNIVTSYCKTCISGRAFQVLT 311


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,962
Number of Sequences: 438
Number of extensions: 5277
Number of successful extensions: 50
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29750994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)