Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O22
         (907 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    26   0.47 
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.7  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    22   7.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 267 SPRIQT--PNGNGLPNLSNTVHITWNPPPRPN---FISSPNPFSWVLAG 398
           SP++Q+  P GN  P+ SNT  +   P P  +   +    N F+W   G
Sbjct: 242 SPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHEYNSFNWTANG 290


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 791  PSLLIFSXXQGGRGWXXVFXGLQRXXAPPPXEK 889
            PS L+F+  Q    W     G  +  A PP ++
Sbjct: 948  PSNLVFNPDQNVCDWPENVEGCMQHTAAPPTKR 980


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = +3

Query: 324 HITWNPPPRPNFISSPNPFSWVLA 395
           H  WN  P  +F   PNP  + LA
Sbjct: 73  HGQWNYSPDNHFEQYPNPTYYNLA 96


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,351
Number of Sequences: 336
Number of extensions: 3591
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25237652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)