Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O22
         (907 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)                  32   0.73 
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_37088| Best HMM Match : AFP (HMM E-Value=2.2)                       29   6.8  
SB_56931| Best HMM Match : AFP (HMM E-Value=0.0013)                    28   9.0  
SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_55297| Best HMM Match : Drf_FH1 (HMM E-Value=0.74)
          Length = 808

 Score = 31.9 bits (69), Expect = 0.73
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = +3

Query: 126 PTLKNPVKVVENADSVVINEPDSFFGQPTVGNGLRNLFDNRPVHR*SSPRIQTPNGNGLP 305
           P +KN  KV EN     +N        P++ NG  N  +     R  S +I TP   G  
Sbjct: 137 PLIKNCEKVGENESKAQVN-------TPSLQNGTANSSNEHDNQRVMS-QIHTPGNFGTN 188

Query: 306 NLSNTVH--ITWNPPPRPNFISSP 371
           NL + ++  +    PP+ N IS P
Sbjct: 189 NLESAINEVVPALTPPQTNIISVP 212


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 264 SSPRIQTPNGNGLPNLSNTVHITWNPPPRPN 356
           S P + +P G    N S ++ +TW  PP+PN
Sbjct: 585 SRPTVVSPPGLEALN-STSIRVTWTTPPKPN 614


>SB_37088| Best HMM Match : AFP (HMM E-Value=2.2)
          Length = 227

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 259 RCTGRLSNRFRSP--FPTVGWPKNESGSLITTESAFSTTLTGFLS 131
           R TG LS   ++P  F   G+P  ++ +  T +  F+T  TG LS
Sbjct: 148 RTTGILSQDTQTPLNFYNTGYPDTQNTTCTTGDFCFTTRTTGILS 192


>SB_56931| Best HMM Match : AFP (HMM E-Value=0.0013)
          Length = 383

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 259 RCTGRLSNRFRSP--FPTVGWPKNESGSLITTESAFSTTLTGFLS 131
           R TG LS   ++P  F   G+P  +  +  T +  F+T  TG LS
Sbjct: 304 RTTGILSQDTQTPLNFYNTGYPDTQDTTCTTGDFCFTTRTTGILS 348


>SB_12474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1393

 Score = 28.3 bits (60), Expect = 9.0
 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = -1

Query: 226  SPF-PTVGWPKNESGSLITTESAFSTTLTGFLSVGHSQQSEDENHEE 89
            +PF P  GW +N+ G L    S      T  + +  S   E+E+ EE
Sbjct: 1332 NPFEPGQGWERNDDGLLEPVWSCGPVLPTSLIDIVESTVDEEEDEEE 1378


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,827,772
Number of Sequences: 59808
Number of extensions: 417737
Number of successful extensions: 824
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2609867019
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)