Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O22
         (907 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical ...    34   0.16 
AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical ...    34   0.16 
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   4.6  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   4.6  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   4.6  

>AF099927-3|AAZ32795.1|  893|Caenorhabditis elegans Hypothetical
           protein T04C4.1b protein.
          Length = 893

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 208 GWPKNESGSLITTESAFSTTLTGFLSVGHSQQSEDENHEEFHFYMITSYH 59
           GW    S S++TT  AFS      ++ G  Q   D +H   HF   +S H
Sbjct: 236 GWRTRTSRSIMTTPEAFSRVRHISITFGEQQHDIDTDHSNQHFGSPSSLH 285


>AF099927-1|AAZ32794.1|  955|Caenorhabditis elegans Hypothetical
           protein T04C4.1a protein.
          Length = 955

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -1

Query: 208 GWPKNESGSLITTESAFSTTLTGFLSVGHSQQSEDENHEEFHFYMITSYH 59
           GW    S S++TT  AFS      ++ G  Q   D +H   HF   +S H
Sbjct: 297 GWRTRTSRSIMTTPEAFSRVRHISITFGEQQHDIDTDHSNQHFGSPSSLH 346


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
 Frame = +3

Query: 300  LPNLS--NTVHITWNPPPRP 353
            LP++S  NTV+ITW+PP +P
Sbjct: 1039 LPSVSIDNTVNITWSPPTQP 1058


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
 Frame = +3

Query: 300  LPNLS--NTVHITWNPPPRP 353
            LP++S  NTV+ITW+PP +P
Sbjct: 1102 LPSVSIDNTVNITWSPPTQP 1121


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/20 (60%), Positives = 17/20 (85%), Gaps = 2/20 (10%)
 Frame = +3

Query: 300  LPNLS--NTVHITWNPPPRP 353
            LP++S  NTV+ITW+PP +P
Sbjct: 1102 LPSVSIDNTVNITWSPPTQP 1121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,416,832
Number of Sequences: 27780
Number of extensions: 331949
Number of successful extensions: 644
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)