Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_O22
         (907 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.72 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.95 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   1.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   5.1  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   5.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 297  GLPNLSNTVHITWNPPPRPNFISSP 371
            G+P+L  T    WNPPP   F+ SP
Sbjct: 1152 GMPHLPFTPFNFWNPPP---FMPSP 1173


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 315  NTVHITWNPPPRPNF 359
            +T+ +TW PPPR ++
Sbjct: 991  HTLKVTWKPPPREDW 1005



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 312  SNTVHITWNPPPRPN 356
            S ++ ++W PP +PN
Sbjct: 1193 SESILVSWRPPSQPN 1207


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 218  KRATKPI*QPPGTSLILPKNTNP 286
            ++ T+P+     TSL LPKN  P
Sbjct: 1056 EKGTRPMIPDDNTSLALPKNEGP 1078


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 174 VINEPDSFFGQPTVGNGLRNLFDNR 248
           VI +  +   +PT GN LR  F+N+
Sbjct: 177 VIQKAHNMELEPTPGNTLRQTFENQ 201


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 226 SPFPTVGWPKNESGSLITT 170
           +P+P   W KNE+ S IT+
Sbjct: 103 APYPDWTWAKNENCSGITS 121


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 223 PFPTVGWPKNESGSLITT 170
           P+P   W KN++ S IT+
Sbjct: 107 PYPNWSWAKNQNCSGITS 124


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,731
Number of Sequences: 438
Number of extensions: 5248
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)